Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1266
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35838| Best HMM Match : NCD3G (HMM E-Value=0.032)                   32   0.54 
SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)                   29   2.9  
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_35838| Best HMM Match : NCD3G (HMM E-Value=0.032)
          Length = 589

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 350 YILESLQHSTFFFTYQRLKGKRY*ATITALYINDRQ*LYSMHKKNIFLG 496
           YI+ S + +TF +T+Q++         T  Y NDR  +YS++  N   G
Sbjct: 372 YIITSQERTTFTWTFQKISSDFMMTKTTHNYPNDRVKIYSINVTNTISG 420


>SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)
          Length = 432

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 595 VYCKVNALSLSHICLSSVDMLCMIS*NYFAYIL 693
           V CKVNA  ++ + L+S+  +C+IS N +  I+
Sbjct: 159 VVCKVNAFLITELLLASMLTICVISVNRYLKIV 191


>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1735

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 571  FRYFNFKLVYCKVNALSLSHICLSSVDMLCMIS*NYFAY 687
            +RY  ++ +  +     +S I +SS+D+ C I   Y  Y
Sbjct: 1683 YRYIKYRHILYRYIKYRISSIVISSIDISCYIKYRYIEY 1721


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,585,959
Number of Sequences: 59808
Number of extensions: 304707
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)