Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1266
         (721 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    27   0.77 
U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase...    24   4.1  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   5.4  

>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 26.6 bits (56), Expect = 0.77
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 104 NIRRHNFFFVQISLYFEFSSRLSMHILTFKY 196
           ++  HNFF  +IS+  EF  ++   +L F Y
Sbjct: 552 SVVNHNFFKKRISIVLEFLPQIIFLVLLFAY 582


>U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 260

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 355 FRITSTLNIFFYISTLERQTLLSDNNCFVHK**AITIFDAQKKYISRSIK 504
           FRI  TLN+  Y   L R+ L      F  +   I   D   K+ SR++K
Sbjct: 126 FRIKGTLNLEGYRKILRRKMLPYARQKFGDEEHYIFQHDNDSKHTSRTVK 175


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 492 RNIFFLCIEYSYCLSF 445
           RN   +CIE  YC+SF
Sbjct: 805 RNGLTICIEKCYCVSF 820


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,537
Number of Sequences: 2352
Number of extensions: 11862
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)