Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1266
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81116-2|CAB03302.1|  346|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 84  MTYFNFIISDVIIFFLFRYLCILSFHQGSQCIY*HLNTD-WINF 212
           MT++  IIS + I FL+RY+C+  FH      +    T  WI++
Sbjct: 95  MTFYLLIISFIGIQFLYRYICL--FHSAKVRYFDGFGTVLWISY 136


>Z81116-2|CAB03302.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.2 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 84  MTYFNFIISDVIIFFLFRYLCILSFH 161
           MT++  IIS + I F++RYLC+  FH
Sbjct: 95  MTFYLLIISFIGIQFVYRYLCL--FH 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,020,574
Number of Sequences: 27780
Number of extensions: 273533
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)