Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1258
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 32 0.096
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.68
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 28 1.6
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 28 1.6
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 2.7
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 3.6
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.3
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 6.3
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 8.4
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 8.4
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 8.4
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 8.4
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 31.9 bits (69), Expect = 0.096
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 432 SGCGRCRVWSMFVRYVRFSELVF*YKRPQKLYIF 533
+GCG+ VW +VR+V F E + LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.68
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 615 ARKIRGRPENAGPDPVRNVRRFSRV 541
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 620 LRLGRSAEGRRTRVRIQSE-T*DDFRECHIKYIQFLRPLILKY*LAKTNITHE 465
+R G+S + R+ ++ D F +KY +F+RP+ L+ K N+TH+
Sbjct: 136 IRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQ--KKANVTHK 186
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -3
Query: 702 SVPSSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFS 547
SV SS+++ E S + +KP+R TA K + + ++ GP+ R + F+
Sbjct: 332 SVYSSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFA 383
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 159 PWNPIEGRYGSEREEHRICGGVRILSADLENSVRDVRGDVAP 284
P+ P+EG Y + ++ HRI R A LE +R V+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Frame = -2
Query: 439 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGAT 275
HP ++ R+ P+ N Y+ + + L + L + + +G ++ ++V +G+T
Sbjct: 254 HPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGST 313
Query: 274 -SPRTSLTEFSRSAESIRTP 218
SP+ ++ ++ +SI TP
Sbjct: 314 VSPKYTIQQY---VQSIGTP 330
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -2
Query: 211 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 74
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 629 RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPLILKY*LAKTNITHE 465
+ D +LG + A + +V + S+ D +E H+KY+Q L+ LAK +I E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 469 TNIDQTRHRPHPLPVQTRHAPV 404
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 357 FPYLHYSID*RLFTLETCCGYGYEPARHL 271
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 595 PSADLPSRKSCRFRFVRDRHDS-VRPPFNGQLRTGHRQGESDCL 723
P A + ++S RFR +D HD+ ++ NG+ Q +S+C+
Sbjct: 90 PRAKMNQQRSRRFRTAKDAHDARLKAERNGE-DFPEEQFDSNCI 132
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -2
Query: 388 YSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESIRTPPQM 209
Y + + L +P+L RL A+HLG +I ++ +P +T ++ + TPP +
Sbjct: 1093 YKAKSSLLVTLKIPSLIPRLRAIHLGK-GKIVIK---KAPLKQITSKTKEKSTSPTPPSI 1148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,878
Number of Sequences: 5004
Number of extensions: 66644
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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