Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1258
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          29   2.4  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   4.2  
At5g42370.1 68418.m05159 expressed protein                             29   4.2  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   4.2  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.5  
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea...    28   5.5  
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea...    28   5.5  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    28   7.3  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    28   7.3  
At5g22390.1 68418.m02612 expressed protein                             27   9.6  

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 453 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 358
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 240 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 106
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 179 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 69
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 42  SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 173
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 235 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 137
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 793

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 376 TDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESI 227
           T     LPL  L Y L   +  D  RI   +G T PR + T F  +  S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338


>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 790

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 376 TDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESI 227
           T     LPL  L Y L   +  D  RI   +G T PR + T F  +  S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 462 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 343
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 462 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 343
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 114 ERSGKSFLFCLSVRVPWNPIEG 179
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,914,535
Number of Sequences: 28952
Number of extensions: 374690
Number of successful extensions: 1127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)