Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1257
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.60 
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   4.2  
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.2  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   4.2  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   5.6  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   5.6  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   7.4  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.4  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   7.4  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   9.7  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 396 ARKIRGRPENAGPDPVRNVRRFSRV 322
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 306  TVFEAALY*NTNSLKRTYARTSTRPGTGRIRFPSKPDTPRSSEPILIPK 160
            TV++A LY NT+  K   A       T    F +   TPR +E  +  K
Sbjct: 878  TVYKAFLYSNTDKHKNLLAFAKVPQETMTREFQANVGTPRDAESTMEKK 926


>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +3

Query: 570 ECQLKKFKQA-RVNGGSNYDSLK 635
           E QL+K K+A ++ GG N+D+LK
Sbjct: 88  ERQLQKKKEAEKIEGGKNHDNLK 110


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +1

Query: 472 NWHGQGESDCLIKQSIAMA---LAGVDA 546
           N HG   +DC+I  S A A   +AG+DA
Sbjct: 341 NTHGSKHTDCIITSSEAAANRFMAGIDA 368


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 523 SQCFV*LDSRIPLV--RASSELTVERRSYRI 437
           S CF   DSRIPLV  + S+  T++ R+Y +
Sbjct: 81  SPCFPNSDSRIPLVNWKTSTNPTLQVRAYML 111


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 213 SGCGRCRVWSMFVRMFVLAS*YFNIMRPQKLYIF 314
           +GCG+  VW  +VR       Y        LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 250 TNIDQTRHRPHPLPVQTRHAPV 185
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 271 LAKTNIRTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTD 152
           +A +N  T  DQT   P+P        PV   N  S V D
Sbjct: 262 IAFSNSSTPTDQTLRPPNPPAANGNATPVTAVNNVSAVAD 301


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 138 FPYLHYSID*RLFTLETCCGYGYEPARHL 52
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -2

Query: 480 VPVLS*PLNGGRTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFS 328
           VP+   PL+   T+     T   RH  T  + +    N GPD + +   +S
Sbjct: 211 VPIFRIPLSDYETDDMDDGTPLQRHVATLNQYQSPIFNLGPDILEDEPSYS 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,369
Number of Sequences: 5004
Number of extensions: 57031
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)