Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1248
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    29   0.43 
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    26   5.3  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    25   7.1  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   9.3  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   9.3  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   9.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.3  

>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +2

Query: 398 MGEQSNAWRILLRNDRKSRHRRIKKQRRYERLAATSQYPCGNFSGTSC*KLFILKDR*AV 577
           +GE ++ W  +L     S    + K +R   LAA    P  N   ++     +  DR  V
Sbjct: 401 VGENNDFWNRMLHRSHLSTMAALHKSQRSHDLAANEHAPILNPKNSALNPRLVTNDRVKV 460

Query: 578 LSQSLCVLTSG 610
            S SL   ++G
Sbjct: 461 KSPSLIQSSTG 471


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -1

Query: 264 RPSAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 130
           +  A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 86  KAKAAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 276 GSCTRPSAGGAKLPSAGLCLNASKAEASLAESGKDM 169
           G+   P+AGGA    A      +K E +  ES +DM
Sbjct: 69  GAVATPAAGGAAGAEATSAAEEAKEEEAAEESDEDM 104


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -1

Query: 126 DFTSR-----VSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSG 4
           DF+SR         + + RRR P  SRR +       RA ++R SG
Sbjct: 5   DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 494 AATSQYPCGNFSGTSC 541
           AA ++  CG +SGTSC
Sbjct: 334 AAAAKQCCGGYSGTSC 349


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 275 PNVRNCGSSRTEQYYYRNDKPSVG 346
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 521  NFSGTSC*KLFILKDR*AVLSQSL 592
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,015
Number of Sequences: 5004
Number of extensions: 55131
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)