Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1248
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.65 
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    30   1.5  
At1g14740.1 68414.m01762 expressed protein                             29   2.0  
At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family...    29   2.6  
At5g42710.1 68418.m05202 hypothetical protein                          28   6.1  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   8.1  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 508 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 401
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
            transcription factor (HUA2) - Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1445

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 128  HCLEPPDSR-GSTVSISLPDSARLASALEAFRHNPADGSFAPPA 256
            HCL PP +      SI+LP S+    ++ +    P    FAPPA
Sbjct: 1162 HCLPPPTAPLAPAQSIALPPSSITRPSMPSHPSLPLQPGFAPPA 1205


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -1

Query: 315 YCSVREEPQFRTFGSCTRPSAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGS 136
           + +VR       F S + P +G  +L  + LC N+ K   SL + GK+++T     S   
Sbjct: 46  FLNVRSNNLDGGFSSKSSPRSGN-ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDD 104

Query: 135 K--QCDFTSRVSHSKRETRRRS 76
           K  + DF +    +   ++R++
Sbjct: 105 KWVERDFFNLREMNPNSSKRKA 126


>At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 217

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +2

Query: 140 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPALGRVHEPNVRNCGSSRTEQYY 319
           PP    ST   + P  +  +S     R  P    FAPP   ++  P+  +   S +   Y
Sbjct: 46  PPLKLKSTPPSNSPSPSSSSSFFSESRSRPVS-PFAPPPSFKLKSPSDSDSNCSASPTPY 104

Query: 320 YRNDKPSVG 346
           +R+  P  G
Sbjct: 105 FRSSSPRAG 113


>At5g42710.1 68418.m05202 hypothetical protein 
          Length = 807

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 143 PDSRGSTVSISLPDSARLASALE-AFRHNPADGSFAPPALGRVHEPNVRNCGSSRTEQYY 319
           P  +G ++   L  S  LA ALE A +    D S +   +  +HE   R+ G +R+ Q +
Sbjct: 75  PYGKGKSME-KLDLSKALAFALENAGKATRVDPSGSASIISFLHEVGRRSLGETRSSQVF 133

Query: 320 YRNDKPS 340
            +  +PS
Sbjct: 134 VQQQQPS 140


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 206 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 66
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,529,064
Number of Sequences: 28952
Number of extensions: 305341
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)