Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1228
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   2.7  
SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyc...    26   6.3  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.3  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.3  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 265 TINAKDEVSNISRYIDSLNNSRVVLKLNNK 176
           T+N +D V N + +IDS+N    V  L  K
Sbjct: 747 TVNLRDFVQNANSWIDSVNECLKVASLKRK 776


>SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 471 YYYDKYHMLKTFKHSPAKL 527
           YY  KYH+   ++  PAKL
Sbjct: 19  YYIQKYHLRSFYQFDPAKL 37


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 453 IGCKDD--YYYDKYHMLKTFKHSPAKLVSFV 539
           +GC  +  Y  +K H LK   H P KL+  +
Sbjct: 396 VGCISNVNYLIEKVHFLKFIDHMPPKLLGII 426


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 223 IDSLNNSRVVLKLNNK*FAGNVSRSVFVHR 134
           ++++NNSR    L  K F+  +S S F+HR
Sbjct: 177 LENVNNSRQDQFLPYKTFSSTISNSDFLHR 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,916
Number of Sequences: 5004
Number of extensions: 42761
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)