Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1228
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421...    29   2.8  

>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
            21742227-21742292,21743213-21743371,21743573-21743609,
            21743757-21744194,21744735-21744817,21744920-21744956,
            21745146-21745214,21745316-21745407,21745481-21745565,
            21745903-21745982,21746327-21746724,21746813-21747717,
            21747825-21747915,21748617-21750680,21750681-21750749,
            21750850-21751273,21751644-21751763
          Length = 1832

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 72   SKPKRPRTNEKPSLENFNY 128
            SKPK+PRT  K + ENF++
Sbjct: 1284 SKPKKPRTTSKKNSENFDW 1302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,927,003
Number of Sequences: 37544
Number of extensions: 227604
Number of successful extensions: 426
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)