Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1228
         (725 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC052614-1|AAH52614.1|  302|Homo sapiens C3orf32 protein protein.      32   1.8  
AB024705-1|BAA76932.1|  353|Homo sapiens fls485 protein.               32   1.8  
BC073979-1|AAH73979.1|  988|Homo sapiens potassium voltage-gated...    31   5.6  
AF493798-1|AAM49574.1|  611|Homo sapiens potassium channel splic...    31   5.6  
AF472412-1|AAM49565.1|  988|Homo sapiens potassium channel HEAG2...    31   5.6  
AF418206-1|AAM28435.1|  988|Homo sapiens voltage-gated potassium...    31   5.6  

>BC052614-1|AAH52614.1|  302|Homo sapiens C3orf32 protein protein.
          Length = 302

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +3

Query: 24  CPGLRHPRCQSPCGFGSKPKRPRTNEKPSLENFNYTQRWTNTDLETFPANYLLFNFNTTR 203
           C G    RC +  G G+K       EK  L        W N+  E F + + L   N  R
Sbjct: 145 CAGSGRRRCSTCSGRGNKTCATCKGEKKLLHFIQLVIMWKNSLFE-FVSEHRL---NCPR 200

Query: 204 ELLSESM*REMF-DTSSFALIVVQFP 278
           ELL+++    +F D +S    +V FP
Sbjct: 201 ELLAKAKGENLFKDENSVVYPIVDFP 226


>AB024705-1|BAA76932.1|  353|Homo sapiens fls485 protein.
          Length = 353

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +3

Query: 24  CPGLRHPRCQSPCGFGSKPKRPRTNEKPSLENFNYTQRWTNTDLETFPANYLLFNFNTTR 203
           C G    RC +  G G+K       EK  L        W N+  E F + + L   N  R
Sbjct: 196 CAGSGRRRCSTCSGRGNKTCATCKGEKKLLHFIQLVIMWKNSLFE-FVSEHRL---NCPR 251

Query: 204 ELLSESM*REMF-DTSSFALIVVQFP 278
           ELL+++    +F D +S    +V FP
Sbjct: 252 ELLAKAKGENLFKDENSVVYPIVDFP 277


>BC073979-1|AAH73979.1|  988|Homo sapiens potassium voltage-gated
           channel, subfamily H (eag-related), member 5 protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -2

Query: 289 SNIFGNCTTINAKDEVSNISRYIDSLNNSRVVLKL 185
           + IFGN TTI  +   +N +RY + LNN R  LKL
Sbjct: 461 ATIFGNVTTI-FQQMYANTNRYHEMLNNVRDFLKL 494


>AF493798-1|AAM49574.1|  611|Homo sapiens potassium channel splice
           variant HEAG2b protein.
          Length = 611

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -2

Query: 289 SNIFGNCTTINAKDEVSNISRYIDSLNNSRVVLKL 185
           + IFGN TTI  +   +N +RY + LNN R  LKL
Sbjct: 461 ATIFGNVTTI-FQQMYANTNRYHEMLNNVRDFLKL 494


>AF472412-1|AAM49565.1|  988|Homo sapiens potassium channel HEAG2
           protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -2

Query: 289 SNIFGNCTTINAKDEVSNISRYIDSLNNSRVVLKL 185
           + IFGN TTI  +   +N +RY + LNN R  LKL
Sbjct: 461 ATIFGNVTTI-FQQMYANTNRYHEMLNNVRDFLKL 494


>AF418206-1|AAM28435.1|  988|Homo sapiens voltage-gated potassium
           channel EAG2 protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -2

Query: 289 SNIFGNCTTINAKDEVSNISRYIDSLNNSRVVLKL 185
           + IFGN TTI  +   +N +RY + LNN R  LKL
Sbjct: 461 ATIFGNVTTI-FQQMYANTNRYHEMLNNVRDFLKL 494


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,046,279
Number of Sequences: 237096
Number of extensions: 1300776
Number of successful extensions: 5835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5835
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)