Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1228
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    28   7.8  

>Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical
           protein C01F6.2 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 42  PRCQSPCGFGSKPKRPRTNEKPSL 113
           PRC SP   GSK   P+T + P +
Sbjct: 111 PRCLSPTNMGSKKSSPQTPKTPDV 134


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 3   PSRSG*GCPGLRHPRCQSPCGFGSKPKRP 89
           P   G GC     P C +PCG G     P
Sbjct: 27  PGAGGGGCCSSAQPACGNPCGGGGAAPAP 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,014,302
Number of Sequences: 27780
Number of extensions: 236097
Number of successful extensions: 563
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)