Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1224
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   138   6e-34
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   138   6e-34
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   138   6e-34
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    54   2e-08
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    32   0.079
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    26   5.2  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    25   6.8  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   9.0  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  138 bits (334), Expect = 6e-34
 Identities = 61/82 (74%), Positives = 72/82 (87%)
 Frame = -2

Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
           +LDCHTAHIACKFAE+ EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ 
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417

Query: 329 PLGRFAVRDMRQTVAVGVIKAV 264
           PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439



 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 28/38 (73%), Positives = 32/38 (84%)
 Frame = -1

Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
           ++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS G
Sbjct: 317 DIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAG 354


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  138 bits (334), Expect = 6e-34
 Identities = 61/82 (74%), Positives = 72/82 (87%)
 Frame = -2

Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
           +LDCHTAHIACKFAE+ EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ 
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417

Query: 329 PLGRFAVRDMRQTVAVGVIKAV 264
           PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439



 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 28/38 (73%), Positives = 32/38 (84%)
 Frame = -1

Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
           ++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS G
Sbjct: 317 DIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAG 354


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  138 bits (334), Expect = 6e-34
 Identities = 61/82 (74%), Positives = 72/82 (87%)
 Frame = -2

Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
           +LDCHTAHIACKFAE+ EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ 
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417

Query: 329 PLGRFAVRDMRQTVAVGVIKAV 264
           PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439



 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 28/38 (73%), Positives = 32/38 (84%)
 Frame = -1

Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
           ++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS G
Sbjct: 317 DIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAG 354


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
 Frame = -2

Query: 614 MLLVTPKTTHLRVLQILQLKSLCLTILVKSQTVHTILDCHTAHIACKFAEIKEKVDRRTG 435
           +L  T    H     I Q+  L L  ++ +     ++  HTA     FA++  K+D+ T 
Sbjct: 546 VLTSTKNPVHATTRFIAQIAILELPSILTTG-YSCVMHIHTAVEEVSFAKLLHKLDK-TN 603

Query: 434 KSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 261
           + ++  P     G   I  L    P+C+E F+++  +GRF +RD   TVAVG V+K ++
Sbjct: 604 RKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 362 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 270
           PLC+   +E P LGRF +R    TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 542 TILVKSQTVHTILDCHTAHIACKFAEIKEKVDRRTGKSTEV 420
           +ILV   + H  ++     +  K A +   V+RR GKST +
Sbjct: 255 SILVPDLSAHVRINSGKLSVLSKNARLTHWVERRIGKSTSL 295


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 385 MAASPDLMDFGLTSVDLPVRRSTFS 459
           ++ +PDL D  L+SVD P++ +T S
Sbjct: 27  LSVAPDLADVLLSSVDQPLKVNTCS 51


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -3

Query: 139 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 44
           G S E     S+   IFY       FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,636
Number of Sequences: 5004
Number of extensions: 50508
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)