Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1224
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 127 8e-30
03_01_0547 + 4093196-4093657,4094267-4095148 127 8e-30
03_01_0544 + 4082528-4082989,4083585-4084466 127 8e-30
03_01_0543 + 4076981-4077442,4078145-4079026 127 8e-30
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 51 7e-07
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 50 2e-06
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 50 2e-06
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 43 2e-04
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258 29 3.0
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 4.0
10_08_0947 + 21749062-21749411,21750471-21750759 28 7.0
10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448 27 9.3
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990... 27 9.3
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 127 bits (306), Expect = 8e-30
Identities = 56/85 (65%), Positives = 70/85 (82%)
Frame = -2
Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
+LDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 407
Query: 329 PLGRFAVRDMRQTVAVGVIKAVNFK 255
PLGRFAVRDMRQTVAVGVIK V K
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNVEKK 432
Score = 60.9 bits (141), Expect = 8e-10
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = -1
Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
+L+RGYVA +SK++P K AA FT+QVI++NHPGQI NG
Sbjct: 307 DLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNG 344
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 127 bits (306), Expect = 8e-30
Identities = 56/85 (65%), Positives = 70/85 (82%)
Frame = -2
Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
+LDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 407
Query: 329 PLGRFAVRDMRQTVAVGVIKAVNFK 255
PLGRFAVRDMRQTVAVGVIK V K
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNVEKK 432
Score = 60.9 bits (141), Expect = 8e-10
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = -1
Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
+L+RGYVA +SK++P K AA FT+QVI++NHPGQI NG
Sbjct: 307 DLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNG 344
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 127 bits (306), Expect = 8e-30
Identities = 56/85 (65%), Positives = 70/85 (82%)
Frame = -2
Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
+LDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 407
Query: 329 PLGRFAVRDMRQTVAVGVIKAVNFK 255
PLGRFAVRDMRQTVAVGVIK V K
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNVEKK 432
Score = 60.9 bits (141), Expect = 8e-10
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = -1
Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
+L+RGYVA +SK++P K AA FT+QVI++NHPGQI NG
Sbjct: 307 DLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNG 344
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 127 bits (306), Expect = 8e-30
Identities = 56/85 (65%), Positives = 70/85 (82%)
Frame = -2
Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
+LDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 407
Query: 329 PLGRFAVRDMRQTVAVGVIKAVNFK 255
PLGRFAVRDMRQTVAVGVIK V K
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNVEKK 432
Score = 60.9 bits (141), Expect = 8e-10
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = -1
Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
+L+RGYVA +SK++P K AA FT+QVI++NHPGQI NG
Sbjct: 307 DLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNG 344
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/94 (28%), Positives = 49/94 (52%)
Frame = -2
Query: 545 LTILVKSQTVHTILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPS 366
L ILV TV ++ ++ +I ++++TGK+++ P+ + S A++ +
Sbjct: 560 LKILVLDITVPILVGLQ---VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLE 616
Query: 365 KPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 264
K +CVE F LGR +R T+AVG++ V
Sbjct: 617 KEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Frame = -2
Query: 578 VLQILQLKSLCLTILVKSQTVHTILDCHTAHI--ACKFAEIKEKVDRRTGKSTEVNPKSI 405
V L+L+ L L + + + + + H H+ A + +I +D+ GK ++ P+ +
Sbjct: 570 VSNFLELRVLVLDVTIPILIGYQV-EFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFL 627
Query: 404 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 273
KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 628 KSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Frame = -2
Query: 578 VLQILQLKSLCLTILVKSQTVHTILDCHTAHI--ACKFAEIKEKVDRRTGKSTEVNPKSI 405
V L+L+ L L + + + + + H H+ A + +I +D+ GK ++ P+ +
Sbjct: 570 VSNFLELRVLVLDVTIPILIGYQV-EFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFL 627
Query: 404 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 273
KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 628 KSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Frame = -2
Query: 575 LQILQLKSLCLTILVKSQTVHTILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS---- 408
LQIL+L L + + +L H+ C+ ++ E++D + K + K
Sbjct: 323 LQILEL----LDNAIFTAGYKAVLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRK 378
Query: 407 ---IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 306
+K+G + + + +C+E+F +FP LGRF +R
Sbjct: 379 PLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
Length = 700
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -2
Query: 518 VHTILDCHTAHIACKFAEIKEKVDRR----TGKSTEVNPKSIKSGDAAIVNLVPSKPLCV 351
V T+L + KF I RR TG ST VN K + +GD+ + + LCV
Sbjct: 165 VQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCV 224
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 55 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 135
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>10_08_0947 + 21749062-21749411,21750471-21750759
Length = 212
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -1
Query: 390 SHCQLGTFQASMCRVLPGIPTPRSFCCP*HEADSCCRSHQGCQLQ 256
S+C + + + P + PR CCP + D+ C Q Q Q
Sbjct: 159 SYCAVLQSEMTYLEQPPAVDLPRLHCCPSDQDDAGCHHKQQQQQQ 203
>10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448
Length = 729
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = -2
Query: 518 VHTILDCHTAHIACKFAEIKEKVDRR----TGKSTEVNPKSIKSGDAAIVNLVPSKPLCV 351
V T+L + KF I RR TG ST VN K + +GD+ + LCV
Sbjct: 227 VQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRTRHGELCV 286
>03_02_0619 +
9904405-9904586,9905315-9906764,9907320-9907509,
9909578-9910164
Length = 802
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 339 GIPTPRSFCCP*HEADSCCRSHQGCQLQ 256
G P+P S P + DSCC + C LQ
Sbjct: 577 GQPSPVSILEPPTDEDSCCSGYFKCNLQ 604
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,937,774
Number of Sequences: 37544
Number of extensions: 337109
Number of successful extensions: 893
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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