Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1224
(630 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 140 6e-34
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 140 6e-34
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 140 6e-34
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 44 9e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 44 9e-05
L15313-10|AAP68920.1| 355|Caenorhabditis elegans Hypothetical p... 29 2.7
L15313-9|AAP68921.1| 357|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 2.7
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 4.8
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 4.8
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 4.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 140 bits (340), Expect = 6e-34
Identities = 64/82 (78%), Positives = 72/82 (87%)
Frame = -2
Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
+LDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++
Sbjct: 326 VLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYA 385
Query: 329 PLGRFAVRDMRQTVAVGVIKAV 264
PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 386 PLGRFAVRDMRQTVAVGVIKSV 407
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = -1
Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
++RRG V DSK +P K A F AQVI++NHPGQISNG
Sbjct: 285 DIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNG 322
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 140 bits (340), Expect = 6e-34
Identities = 64/82 (78%), Positives = 72/82 (87%)
Frame = -2
Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
+LDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++
Sbjct: 360 VLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYA 419
Query: 329 PLGRFAVRDMRQTVAVGVIKAV 264
PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSV 441
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = -1
Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
++RRG V DSK +P K A F AQVI++NHPGQISNG
Sbjct: 319 DIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNG 356
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 140 bits (340), Expect = 6e-34
Identities = 64/82 (78%), Positives = 72/82 (87%)
Frame = -2
Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
+LDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++
Sbjct: 360 VLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYA 419
Query: 329 PLGRFAVRDMRQTVAVGVIKAV 264
PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSV 441
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = -1
Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
++RRG V DSK +P K A F AQVI++NHPGQISNG
Sbjct: 319 DIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNG 356
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -2
Query: 452 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 276
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 275 IKAV 264
+K V
Sbjct: 528 LKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = -2
Query: 506 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 327
L H+ + C F + +++ G+ + P+ I G +A+V + + +E+F
Sbjct: 508 LYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRA 567
Query: 326 LGRFAVRDMRQTVAVGVIKAV 264
LGR R T+A G+++ V
Sbjct: 568 LGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = -2
Query: 506 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 327
L H+ + C F + +++ G+ + P+ I G +A+V + + +E+F
Sbjct: 526 LYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRA 585
Query: 326 LGRFAVRDMRQTVAVGVIKAV 264
LGR R T+A G+++ V
Sbjct: 586 LGRVTFRAGGNTIAAGIVEKV 606
>L15313-10|AAP68920.1| 355|Caenorhabditis elegans Hypothetical
protein ZK353.1a protein.
Length = 355
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 273 DDSDSNCLPHVTDSKTTEGWE 335
D++ +N LPH+++ + TEG+E
Sbjct: 42 DETSTNFLPHISEREVTEGYE 62
>L15313-9|AAP68921.1| 357|Caenorhabditis elegans Hypothetical
protein ZK353.1b protein.
Length = 357
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 273 DDSDSNCLPHVTDSKTTEGWE 335
D++ +N LPH+++ + TEG+E
Sbjct: 44 DETSTNFLPHISEREVTEGYE 64
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 124 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 17
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 506 LDCHTAHIACKFAEIKEKVDRRTGKSTE 423
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 506 LDCHTAHIACKFAEIKEKVDRRTGKSTE 423
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 506 LDCHTAHIACKFAEIKEKVDRRTGKSTE 423
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,523,187
Number of Sequences: 27780
Number of extensions: 294252
Number of successful extensions: 762
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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