Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1224
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   161   7e-42
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   161   7e-42
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    92   4e-21
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    31   0.009
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.9  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.9  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  161 bits (390), Expect = 7e-42
 Identities = 74/85 (87%), Positives = 80/85 (94%)
 Frame = -2

Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
           +LDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+KP+CVE+FQEFP
Sbjct: 360 VLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFP 419

Query: 329 PLGRFAVRDMRQTVAVGVIKAVNFK 255
           PLGRFAVRDMRQTVAVGVIK+V FK
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSVTFK 444



 Score = 81.0 bits (191), Expect = 9e-18
 Identities = 36/38 (94%), Positives = 37/38 (97%)
 Frame = -1

Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
           ELRRGYVAGDSKN PP+GAADFTAQVIVLNHPGQISNG
Sbjct: 319 ELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNG 356


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  161 bits (390), Expect = 7e-42
 Identities = 74/85 (87%), Positives = 79/85 (92%)
 Frame = -2

Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
           +LDCHTAHIACKFA+IKEK DRR GK+TE NPKSIKSGDAAIV LVPSKP+C E+FQEFP
Sbjct: 360 VLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFP 419

Query: 329 PLGRFAVRDMRQTVAVGVIKAVNFK 255
           PLGRFAVRDMRQTVAVGVIKAV FK
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKAVTFK 444



 Score = 84.6 bits (200), Expect = 7e-19
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -1

Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
           ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG
Sbjct: 319 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 356


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 92.3 bits (219), Expect = 4e-21
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = -2

Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 363
           +LDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 71  VLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119



 Score = 81.0 bits (191), Expect = 9e-18
 Identities = 36/38 (94%), Positives = 37/38 (97%)
 Frame = -1

Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
           ELRRGYVAGDSKN PP+GAADFTAQVIVLNHPGQISNG
Sbjct: 30  ELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNG 67


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 31.1 bits (67), Expect = 0.009
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 630 ELRRGYVAGDSKN 592
           ELRRGYVAGDSKN
Sbjct: 262 ELRRGYVAGDSKN 274


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 152 KYRSCMKNCAVNSSSYFLPLVAFS 223
           K+  C+KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 294 DSCCRSHQGC 265
           D+CCR+H  C
Sbjct: 56  DACCRTHDMC 65


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 152 KYRSCMKNCAVNSSSYFLPLVAFS 223
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 294 DSCCRSHQGC 265
           D+CCR+H  C
Sbjct: 61  DACCRTHDMC 70


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 152 KYRSCMKNCAVNSSSYFLPLVAFS 223
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 294 DSCCRSHQGC 265
           D+CCR+H  C
Sbjct: 61  DACCRTHDMC 70


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 113 CSPFFLRNTFR*MKYRSCMKN 175
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 419 NPKSIKSGDAAIVNLVPSKPLC 354
           NP+    G   +V L PS P C
Sbjct: 66  NPEHKPPGPKDLVYLEPSPPFC 87


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 419 NPKSIKSGDAAIVNLVPSKPLC 354
           NP+    G   +V L PS P C
Sbjct: 67  NPEHKPPGPKDLVYLEPSPPFC 88


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 397 EMQPLSTWYLPSL 359
           +  P+  WY+PSL
Sbjct: 589 DKNPVQLWYVPSL 601


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,450
Number of Sequences: 438
Number of extensions: 3283
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)