Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1224
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 127 7e-30
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 127 7e-30
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 127 7e-30
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 127 7e-30
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 117 7e-27
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 61 7e-10
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 51 6e-07
At4g27900.2 68417.m04005 expressed protein 32 0.36
At4g27900.1 68417.m04004 expressed protein 32 0.36
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 4.4
At5g42860.1 68418.m05224 expressed protein 25 5.3
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 127 bits (306), Expect = 7e-30
Identities = 56/85 (65%), Positives = 71/85 (83%)
Frame = -2
Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
+LDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYP 407
Query: 329 PLGRFAVRDMRQTVAVGVIKAVNFK 255
PLGRFAVRDMRQTVAVGVIK+V+ K
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVDKK 432
Score = 64.5 bits (150), Expect = 6e-11
Identities = 26/38 (68%), Positives = 35/38 (92%)
Frame = -1
Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NG
Sbjct: 307 DLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNG 344
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 127 bits (306), Expect = 7e-30
Identities = 56/85 (65%), Positives = 71/85 (83%)
Frame = -2
Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
+LDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYP 407
Query: 329 PLGRFAVRDMRQTVAVGVIKAVNFK 255
PLGRFAVRDMRQTVAVGVIK+V+ K
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVDKK 432
Score = 64.5 bits (150), Expect = 6e-11
Identities = 26/38 (68%), Positives = 35/38 (92%)
Frame = -1
Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NG
Sbjct: 307 DLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNG 344
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 127 bits (306), Expect = 7e-30
Identities = 56/85 (65%), Positives = 71/85 (83%)
Frame = -2
Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
+LDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYP 407
Query: 329 PLGRFAVRDMRQTVAVGVIKAVNFK 255
PLGRFAVRDMRQTVAVGVIK+V+ K
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVDKK 432
Score = 64.5 bits (150), Expect = 6e-11
Identities = 26/38 (68%), Positives = 35/38 (92%)
Frame = -1
Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NG
Sbjct: 307 DLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNG 344
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 127 bits (306), Expect = 7e-30
Identities = 56/85 (65%), Positives = 71/85 (83%)
Frame = -2
Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
+LDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYP 407
Query: 329 PLGRFAVRDMRQTVAVGVIKAVNFK 255
PLGRFAVRDMRQTVAVGVIK+V+ K
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVDKK 432
Score = 64.5 bits (150), Expect = 6e-11
Identities = 26/38 (68%), Positives = 35/38 (92%)
Frame = -1
Query: 630 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 517
+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NG
Sbjct: 307 DLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNG 344
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 117 bits (281), Expect = 7e-27
Identities = 50/82 (60%), Positives = 66/82 (80%)
Frame = -2
Query: 509 ILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 330
+LDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P+KP+ VE++ +P
Sbjct: 14 VLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYP 73
Query: 329 PLGRFAVRDMRQTVAVGVIKAV 264
PLGRFA+RDMRQTV VGVIK+V
Sbjct: 74 PLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 60.9 bits (141), Expect = 7e-10
Identities = 33/107 (30%), Positives = 55/107 (51%)
Frame = -2
Query: 593 TTHLRVLQILQLKSLCLTILVKSQTVHTILDCHTAHIACKFAEIKEKVDRRTGKSTEVNP 414
T + LQIL+L L + + IL H C+ E+K ++D +T K +
Sbjct: 420 TEFVAQLQILEL----LDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRKPMKKKV 475
Query: 413 KSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 273
+K+G A + + + +C+E F +FP LGRF +R +T+AVG +
Sbjct: 476 LFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 51.2 bits (117), Expect = 6e-07
Identities = 33/109 (30%), Positives = 58/109 (53%)
Frame = -2
Query: 590 THLRVLQILQLKSLCLTILVKSQTVHTILDCHTAHIACKFAEIKEKVDRRTGKSTEVNPK 411
THL L +L L+ IL+ SQ + H A A ++ +D +TG+ T+ +P+
Sbjct: 560 THLE-LMVLVLEG-ATPILLGSQLEFHV---HHAKEAATVVKLVAMLDPKTGQPTKKSPR 614
Query: 410 SIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 264
+ + +A++ + P+CVE+F E LGR +R +TVA+G + +
Sbjct: 615 CLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 416 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 324
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 416 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 324
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 476 KFAEIKEKVDRRTGKSTEVNPKSI 405
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At5g42860.1 68418.m05224 expressed protein
Length = 320
Score = 25.0 bits (52), Expect(2) = 5.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 223 RKGHQGQEVARAVNSTIFHTTAILHSPKGVSKEKRATNS 107
R H G++ A T FH+T +L SP G +++S
Sbjct: 33 RDSHDGEKTA-----TSFHSTPVLTSPMGSPPHSHSSSS 66
Score = 21.4 bits (43), Expect(2) = 5.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 367 PSLYV*SPSRNSH 329
P+ +V SPSR+SH
Sbjct: 24 PAYFVQSPSRDSH 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,656,435
Number of Sequences: 28952
Number of extensions: 270948
Number of successful extensions: 767
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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