Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1222
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   136   3e-33
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   136   3e-33
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   136   3e-33
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    52   5e-08
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    32   0.070
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    27   1.5  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    25   6.1  
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.1  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.0  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  136 bits (328), Expect = 3e-33
 Identities = 61/82 (74%), Positives = 71/82 (86%)
 Frame = -1

Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
           VLDCHTAHIACKFA + EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ 
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417

Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
           PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = -2

Query: 578 GAADFTAQVIVLNHPGQISNGYT 510
           G A FTAQVI+LNHPGQIS GY+
Sbjct: 334 GCASFTAQVIILNHPGQISAGYS 356


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  136 bits (328), Expect = 3e-33
 Identities = 61/82 (74%), Positives = 71/82 (86%)
 Frame = -1

Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
           VLDCHTAHIACKFA + EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ 
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417

Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
           PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = -2

Query: 578 GAADFTAQVIVLNHPGQISNGYT 510
           G A FTAQVI+LNHPGQIS GY+
Sbjct: 334 GCASFTAQVIILNHPGQISAGYS 356


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  136 bits (328), Expect = 3e-33
 Identities = 61/82 (74%), Positives = 71/82 (86%)
 Frame = -1

Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
           VLDCHTAHIACKFA + EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ 
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417

Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
           PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = -2

Query: 578 GAADFTAQVIVLNHPGQISNGYT 510
           G A FTAQVI+LNHPGQIS GY+
Sbjct: 334 GCASFTAQVIILNHPGQISAGYS 356


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = -1

Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
           V+  HTA     FA +  K+D+ T + ++  P     G   I  L    P+C+E F+++ 
Sbjct: 580 VMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQ 638

Query: 327 PLGRFAVRDMRQTVAVG-VIKAVN 259
            +GRF +RD   TVAVG V+K ++
Sbjct: 639 YMGRFTLRDQGTTVAVGKVVKILD 662


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 31.9 bits (69), Expect = 0.070
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 360 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 268
           PLC+   +E P LGRF +R    TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 532 VKSQTVTHSLGLPHCPHCLQICSNQRKS 449
           ++S T+ H LGLP  P  + + + Q +S
Sbjct: 309 LRSSTIRHKLGLPEVPSAMPVPNAQNES 336


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 383 MAASPDLMDFGLTSVDLPVRRSTFS 457
           ++ +PDL D  L+SVD P++ +T S
Sbjct: 27  LSVAPDLADVLLSSVDQPLKVNTCS 51


>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 465 VIKEKVDRRTGKSTEVNPKSIKSGDAAIVNL 373
           V +EKV +RT  S  +N  + ++ D  ++NL
Sbjct: 37  VSEEKVTQRTASSDSLNTIASENNDENVINL 67


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -2

Query: 137 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 42
           G S E     S+   IFY       FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,805
Number of Sequences: 5004
Number of extensions: 47941
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)