Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1222
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 124 7e-29
03_01_0547 + 4093196-4093657,4094267-4095148 124 7e-29
03_01_0544 + 4082528-4082989,4083585-4084466 124 7e-29
03_01_0543 + 4076981-4077442,4078145-4079026 124 7e-29
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 49 2e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 46 2e-05
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 46 2e-05
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 41 8e-04
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 3.5
10_08_0947 + 21749062-21749411,21750471-21750759 28 6.2
06_01_0649 + 4698384-4698780,4699047-4699144,4699673-4699697,469... 28 6.2
02_05_0254 - 27177167-27177393,27177476-27177725,27177818-271780... 28 6.2
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990... 27 8.2
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 124 bits (298), Expect = 7e-29
Identities = 55/82 (67%), Positives = 68/82 (82%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHT+HIA KFA + K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 407
Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
PLGRFAVRDMRQTVAVGVIK V
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNV 429
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -2
Query: 575 AADFTAQVIVLNHPGQISNGY 513
AA FT+QVI++NHPGQI NGY
Sbjct: 325 AASFTSQVIIMNHPGQIGNGY 345
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 124 bits (298), Expect = 7e-29
Identities = 55/82 (67%), Positives = 68/82 (82%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHT+HIA KFA + K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 407
Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
PLGRFAVRDMRQTVAVGVIK V
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNV 429
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -2
Query: 575 AADFTAQVIVLNHPGQISNGY 513
AA FT+QVI++NHPGQI NGY
Sbjct: 325 AASFTSQVIIMNHPGQIGNGY 345
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 124 bits (298), Expect = 7e-29
Identities = 55/82 (67%), Positives = 68/82 (82%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHT+HIA KFA + K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 407
Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
PLGRFAVRDMRQTVAVGVIK V
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNV 429
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -2
Query: 575 AADFTAQVIVLNHPGQISNGY 513
AA FT+QVI++NHPGQI NGY
Sbjct: 325 AASFTSQVIIMNHPGQIGNGY 345
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 124 bits (298), Expect = 7e-29
Identities = 55/82 (67%), Positives = 68/82 (82%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHT+HIA KFA + K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 407
Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
PLGRFAVRDMRQTVAVGVIK V
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNV 429
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -2
Query: 575 AADFTAQVIVLNHPGQISNGY 513
AA FT+QVI++NHPGQI NGY
Sbjct: 325 AASFTSQVIIMNHPGQIGNGY 345
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = -1
Query: 483 IACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 304
++ I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLR 636
Query: 303 DMRQTVAVGVIKAV 262
T+AVG++ V
Sbjct: 637 SQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = -1
Query: 504 LDCHTAHI--ACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 331
++ H H+ A + I +D+ GK ++ P+ +KS A+V + P+CV+ F +
Sbjct: 593 VEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKC 651
Query: 330 PPLGRFAVRDMRQTVAVGVI 271
LGR +R T+AVGV+
Sbjct: 652 RALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = -1
Query: 504 LDCHTAHI--ACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 331
++ H H+ A + I +D+ GK ++ P+ +KS A+V + P+CV+ F +
Sbjct: 593 VEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKC 651
Query: 330 PPLGRFAVRDMRQTVAVGVI 271
LGR +R T+AVGV+
Sbjct: 652 RALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKS-------IKSGDAAIVNLVPSKPLCV 349
VL H+ C+ + E++D + K + K +K+G + + + +C+
Sbjct: 341 VLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICI 400
Query: 348 ESFQEFPPLGRFAVR 304
E+F +FP LGRF +R
Sbjct: 401 ENFSDFPQLGRFTLR 415
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 53 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 133
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>10_08_0947 + 21749062-21749411,21750471-21750759
Length = 212
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -3
Query: 388 SHCQLGTFQASMCRVLPGIPTPRSFCCP*HEADSCCRSHQGCQLQ 254
S+C + + + P + PR CCP + D+ C Q Q Q
Sbjct: 159 SYCAVLQSEMTYLEQPPAVDLPRLHCCPSDQDDAGCHHKQQQQQQ 203
>06_01_0649 +
4698384-4698780,4699047-4699144,4699673-4699697,
4699809-4699929,4700022-4700156,4700392-4700602
Length = 328
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = -2
Query: 296 GRQLLSESSRLSTSGGWWWQGH*SCRKGHQGQEVARAVNSTIFHTTAILHSPKGVSKEKR 117
GR+ + S L + G WQ ++G G E R + +LH P+ + E+
Sbjct: 38 GRRF-APGSALGSKGCLNWQDRGRSKRGVDGGEAVRIKAQVLAPQRQLLHDPEVLPLEEV 96
Query: 116 ATNS 105
AT S
Sbjct: 97 ATKS 100
>02_05_0254 -
27177167-27177393,27177476-27177725,27177818-27178054,
27178138-27178296,27179454-27179527,27180929-27181172
Length = 396
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 332 NSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRRSTFSLITANLQAMWAVWQSKTV 511
N + RGL+GT A S L G + + + + F+ + N+ A + + TV
Sbjct: 133 NKTSNPLFRGLQGTNFASAGSGILDSTGQSIIPMSKQVQQFAAVQRNISARISQQAADTV 192
Query: 512 CNRLRF 529
+R F
Sbjct: 193 LSRSLF 198
>03_02_0619 +
9904405-9904586,9905315-9906764,9907320-9907509,
9909578-9910164
Length = 802
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 337 GIPTPRSFCCP*HEADSCCRSHQGCQLQ 254
G P+P S P + DSCC + C LQ
Sbjct: 577 GQPSPVSILEPPTDEDSCCSGYFKCNLQ 604
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,813,150
Number of Sequences: 37544
Number of extensions: 325070
Number of successful extensions: 912
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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