Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1222
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 140 7e-34
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 4e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.003
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 2.1
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4) 29 2.7
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 6.3
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 6.3
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 6.3
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 6.3
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 6.3
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 6.3
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11) 27 8.4
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 140 bits (339), Expect = 7e-34
Identities = 62/83 (74%), Positives = 74/83 (89%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHTAHIACKF + EK+DRR+GK E NPK IK+GDAA+V ++PSKP+CVE+F EFP
Sbjct: 219 VLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFP 278
Query: 327 PLGRFAVRDMRQTVAVGVIKAVN 259
PLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 279 PLGRFAVRDMKQTVAVGVIKSVD 301
Score = 35.5 bits (78), Expect = 0.032
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -2
Query: 566 FTAQVIVLNHPGQISNGYT 510
FTAQVIV+NHPG+I GY+
Sbjct: 199 FTAQVIVMNHPGEIHAGYS 217
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.4 bits (110), Expect = 4e-06
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -1
Query: 450 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 301
+D++TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -1
Query: 387 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 271
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 30.7 bits (66), Expect = 0.90
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = -1
Query: 528 NLKRLHTVLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 358
N+ + H + + HIA K V D ++ K+ ++ PK++ SGD ++VP++P
Sbjct: 63 NILKFHCI---YLFHIAKKLEV----KDSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 30.7 bits (66), Expect = 0.90
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 398 DLMDF--GLTSVDLPVRRSTFSL-ITANLQAMWAVWQSK 505
DL +F G+T++ LP ST + NLQ W +WQSK
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQSK 2494
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 381 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 292
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 23 FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 163
+QI+Y+ Y KI +H++ K RK + L FFPS H + +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355
>SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)
Length = 598
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 346 VLPGIPTPRSFCCP*HEADSCCRSHQGC 263
+L G T R F C +CCRSH GC
Sbjct: 330 LLYGPVTRRLFGCNLSRKKNCCRSHAGC 357
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 465 LQICRQCGQCGNPRLCVTV*DLTRMVKHNDLSCKICS 575
L +C QCGQC +P CV V + +M+ C C+
Sbjct: 767 LIVCSQCGQCFHP-YCVGV-KVNKMILSKGWRCLDCT 801
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 381 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 292
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 381 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 292
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 381 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 292
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 381 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 292
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 381 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 292
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 381 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 292
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 381 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 292
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 381 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 292
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 381 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 292
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 381 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 292
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 381 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 292
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)
Length = 461
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -2
Query: 185 VNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISE 24
V++ + A++ P V K+KR SFL Y V +F ++ +V+H ++E
Sbjct: 3 VSTDLAKLEAVISWP--VPKKKRELQSFLGLCTYYRKYVKMFADIARVLHRLTE 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,380,406
Number of Sequences: 59808
Number of extensions: 384326
Number of successful extensions: 1081
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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