Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1222
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 138 3e-33
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 138 3e-33
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 138 3e-33
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 43 1e-04
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 43 1e-04
L15313-10|AAP68920.1| 355|Caenorhabditis elegans Hypothetical p... 29 2.4
L15313-9|AAP68921.1| 357|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 2.4
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 27 7.3
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 27 7.3
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 27 7.3
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 27 7.3
AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi dom... 27 9.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 138 bits (334), Expect = 3e-33
Identities = 64/82 (78%), Positives = 71/82 (86%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHTAHIACKF +KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++
Sbjct: 326 VLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYA 385
Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 386 PLGRFAVRDMRQTVAVGVIKSV 407
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -2
Query: 575 AADFTAQVIVLNHPGQISNGYT 510
A F AQVI++NHPGQISNGYT
Sbjct: 303 ARTFHAQVIIMNHPGQISNGYT 324
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 138 bits (334), Expect = 3e-33
Identities = 64/82 (78%), Positives = 71/82 (86%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHTAHIACKF +KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++
Sbjct: 360 VLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYA 419
Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSV 441
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -2
Query: 575 AADFTAQVIVLNHPGQISNGYT 510
A F AQVI++NHPGQISNGYT
Sbjct: 337 ARTFHAQVIIMNHPGQISNGYT 358
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 138 bits (334), Expect = 3e-33
Identities = 64/82 (78%), Positives = 71/82 (86%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHTAHIACKF +KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++
Sbjct: 360 VLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYA 419
Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSV 441
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -2
Query: 575 AADFTAQVIVLNHPGQISNGYT 510
A F AQVI++NHPGQISNGYT
Sbjct: 337 ARTFHAQVIIMNHPGQISNGYT 358
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -1
Query: 450 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 274
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 273 IKAV 262
+K V
Sbjct: 528 LKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/88 (23%), Positives = 41/88 (46%)
Frame = -1
Query: 525 LKRLHTVLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVE 346
+K L H+ + C F + +++ G+ + P+ I G +A+V + + +E
Sbjct: 501 IKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIE 560
Query: 345 SFQEFPPLGRFAVRDMRQTVAVGVIKAV 262
+F LGR R T+A G+++ V
Sbjct: 561 TFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/88 (23%), Positives = 41/88 (46%)
Frame = -1
Query: 525 LKRLHTVLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVE 346
+K L H+ + C F + +++ G+ + P+ I G +A+V + + +E
Sbjct: 519 IKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIE 578
Query: 345 SFQEFPPLGRFAVRDMRQTVAVGVIKAV 262
+F LGR R T+A G+++ V
Sbjct: 579 TFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>L15313-10|AAP68920.1| 355|Caenorhabditis elegans Hypothetical
protein ZK353.1a protein.
Length = 355
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +1
Query: 271 DDSDSNCLPHVTDSKTTEGWE 333
D++ +N LPH+++ + TEG+E
Sbjct: 42 DETSTNFLPHISEREVTEGYE 62
>L15313-9|AAP68921.1| 357|Caenorhabditis elegans Hypothetical
protein ZK353.1b protein.
Length = 357
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +1
Query: 271 DDSDSNCLPHVTDSKTTEGWE 333
D++ +N LPH+++ + TEG+E
Sbjct: 44 DETSTNFLPHISEREVTEGYE 64
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 122 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 15
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 504 LDCHTAHIACKFAVIKEKVDRRTGKSTE 421
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 504 LDCHTAHIACKFAVIKEKVDRRTGKSTE 421
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 27.5 bits (58), Expect = 7.3
Identities = 24/76 (31%), Positives = 32/76 (42%)
Frame = +2
Query: 308 TAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRRSTFSLITANLQAMW 487
T RPR S + S R E T +T+ +S + LT +L R T IT +
Sbjct: 211 TTSRPRS-RSPRSSESRHNETTSITLPSSFNSTVRKLTLKELMTTRDTMPKITTAEPSSL 269
Query: 488 AVWQSKTVCNRLRFDQ 535
SKTV FD+
Sbjct: 270 TTSLSKTVIQGTCFDE 285
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 504 LDCHTAHIACKFAVIKEKVDRRTGKSTE 421
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi
domain-containing protein2 protein.
Length = 975
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 167 HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNL 51
H TA L S K V+ K+ F+ + ++ C+ LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,522,767
Number of Sequences: 27780
Number of extensions: 281915
Number of successful extensions: 752
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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