Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1222
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 124 6e-29
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 124 6e-29
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 124 6e-29
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 124 6e-29
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 114 3e-26
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 57 1e-08
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 49 2e-06
At4g27900.2 68417.m04005 expressed protein 32 0.32
At4g27900.1 68417.m04004 expressed protein 32 0.32
At5g49490.1 68418.m06125 MADS-box family protein contains simila... 28 3.9
At5g42860.1 68418.m05224 expressed protein 25 4.7
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 27 9.0
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 27 9.0
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 27 9.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 124 bits (298), Expect = 6e-29
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHT+HIA KF+ I K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYP 407
Query: 327 PLGRFAVRDMRQTVAVGVIKAVN 259
PLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVD 430
Score = 44.4 bits (100), Expect = 6e-05
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = -2
Query: 578 GAADFTAQVIVLNHPGQISNGY 513
GAA+FT+QVI++NHPGQI NGY
Sbjct: 324 GAANFTSQVIIMNHPGQIGNGY 345
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 124 bits (298), Expect = 6e-29
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHT+HIA KF+ I K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYP 407
Query: 327 PLGRFAVRDMRQTVAVGVIKAVN 259
PLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVD 430
Score = 44.4 bits (100), Expect = 6e-05
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = -2
Query: 578 GAADFTAQVIVLNHPGQISNGY 513
GAA+FT+QVI++NHPGQI NGY
Sbjct: 324 GAANFTSQVIIMNHPGQIGNGY 345
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 124 bits (298), Expect = 6e-29
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHT+HIA KF+ I K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYP 407
Query: 327 PLGRFAVRDMRQTVAVGVIKAVN 259
PLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVD 430
Score = 44.4 bits (100), Expect = 6e-05
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = -2
Query: 578 GAADFTAQVIVLNHPGQISNGY 513
GAA+FT+QVI++NHPGQI NGY
Sbjct: 324 GAANFTSQVIIMNHPGQIGNGY 345
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 124 bits (298), Expect = 6e-29
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHT+HIA KF+ I K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYP 407
Query: 327 PLGRFAVRDMRQTVAVGVIKAVN 259
PLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVD 430
Score = 44.4 bits (100), Expect = 6e-05
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = -2
Query: 578 GAADFTAQVIVLNHPGQISNGY 513
GAA+FT+QVI++NHPGQI NGY
Sbjct: 324 GAANFTSQVIIMNHPGQIGNGY 345
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 114 bits (275), Expect = 3e-26
Identities = 50/82 (60%), Positives = 65/82 (79%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VLDCHT+HIA KF+ I K+D RTG E PK +K+ +AAI+N+ P+KP+ VE++ +P
Sbjct: 14 VLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYP 73
Query: 327 PLGRFAVRDMRQTVAVGVIKAV 262
PLGRFA+RDMRQTV VGVIK+V
Sbjct: 74 PLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = -1
Query: 507 VLDCHTAHIACKFAVIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
+L H C+ +K ++D +T K + +K+G A + + + +C+E F +FP
Sbjct: 444 ILHIHAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFP 503
Query: 327 PLGRFAVRDMRQTVAVGVI 271
LGRF +R +T+AVG +
Sbjct: 504 QLGRFTLRTEGKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = -1
Query: 516 LHTVLDCHTAHIACKFAVIK--EKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVES 343
L + L+ H H V+K +D +TG+ T+ +P+ + + +A++ + P+CVE+
Sbjct: 577 LGSQLEFHVHHAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVET 636
Query: 342 FQEFPPLGRFAVRDMRQTVAVGVIKAV 262
F E LGR +R +TVA+G + +
Sbjct: 637 FSESRALGRVFLRSSGRTVAMGKVTRI 663
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.32
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 414 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 322
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.32
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 414 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 322
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At5g49490.1 68418.m06125 MADS-box family protein contains
similarity to MADS-box protein
Length = 285
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 272 SRLSTSGGWWWQGH*SCRKGHQGQEVARAVNSTIFHTTAILHSPKGVSKEKRATN 108
SR + G+WW S K QE++ A+NS + +L + K +S E+ N
Sbjct: 141 SRTNLGLGFWWNNE-SLNKSENPQEISDAINSML----TLLSNLKELSGEEALVN 190
>At5g42860.1 68418.m05224 expressed protein
Length = 320
Score = 25.0 bits (52), Expect(2) = 4.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 221 RKGHQGQEVARAVNSTIFHTTAILHSPKGVSKEKRATNS 105
R H G++ A T FH+T +L SP G +++S
Sbjct: 33 RDSHDGEKTA-----TSFHSTPVLTSPMGSPPHSHSSSS 66
Score = 21.4 bits (43), Expect(2) = 4.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 365 PSLYV*SPSRNSH 327
P+ +V SPSR+SH
Sbjct: 24 PAYFVQSPSRDSH 36
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
profile PF03107: DC1 domain
Length = 1610
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 238 CHHQPPEVDSLDDSDSNCLPHVTDSKTTE 324
C H DS DSD N + HV DS E
Sbjct: 1113 CLHNVRPTDSDSDSDGNYVSHVEDSLNHE 1141
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 474 KFAVIKEKVDRRTGKSTEVNPKSI 403
+F KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -1
Query: 432 KSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 259
K+++ +P GD+ IV P KPL + S ++ PP+ + T + ++ VN
Sbjct: 447 KNSKKDPLPSAIGDSKIV--APEKPLALHSAKDSPPIQNNEAK-TEDTPVLSTVQPVN 501
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,720,749
Number of Sequences: 28952
Number of extensions: 259180
Number of successful extensions: 708
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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