Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1221
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    28   3.3  
11_06_0661 - 26009838-26010950,26011302-26011802                       27   5.7  
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843...    27   7.6  
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875...    27   7.6  

>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 273 KSIVGTGYRGERLIEPSSSWFRPKFPSG 356
           + + GTG      + PSS+WF P+  SG
Sbjct: 12  RCVFGTGPLPPASLSPSSAWFDPELSSG 39


>11_06_0661 - 26009838-26010950,26011302-26011802
          Length = 537

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 207 HHLSGPSICAQSAPSFTDWK 148
           HHL GP+  + S+P    WK
Sbjct: 297 HHLHGPTSSSSSSPVMASWK 316


>02_05_0847 +
           32183249-32183486,32184001-32184118,32184231-32184376,
           32184591-32186080
          Length = 663

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 189 WDPKDGELCLVRSKSGETLMEDVAILTCKS 278
           WD +  E+  VRS S E  +    IL+C++
Sbjct: 606 WDKERSEVACVRSTSVEPCLHSPPILSCRA 635


>02_05_0602 +
           30283893-30284170,30286259-30286305,30286534-30287510,
           30287611-30287920,30288561-30290197
          Length = 1082

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 183 KCWDPKDGELCLVRSKSGETLMEDVAILTCKSIVGTGYRGERLIEPSSSW 332
           KC+ P +  L ++R     T     A+    S+V   +RG  ++E  SSW
Sbjct: 672 KCFMPDELNLSIIRVLLALTAHAK-ALAAVVSVVRENHRGHSIVELMSSW 720


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,755,229
Number of Sequences: 37544
Number of extensions: 219911
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)