Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1221
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.017
SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.12 
SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)            30   0.63 
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)             29   1.9  
SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)                  27   4.5  
SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 17/25 (68%), Positives = 18/25 (72%)
 Frame = -2

Query: 252 PPSGFPLTST*PGIVHHLSGPSICA 178
           PP  FPL S   GIVHHLSGP+ CA
Sbjct: 5   PPPEFPLASPYSGIVHHLSGPNRCA 29


>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = -1

Query: 253 SSIRVSPDFDLTRHSSPSFGSQHLCS 176
           +S RVS  F L RHSSPSFGSQ + S
Sbjct: 39  ASTRVSSGFTLFRHSSPSFGSQQMRS 64


>SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -1

Query: 313 ISLSPLYPVPTIDLHVR 263
           ISLSPLYP  TIDLHVR
Sbjct: 38  ISLSPLYPNLTIDLHVR 54


>SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)
          Length = 703

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +3

Query: 171 RSEHKCWDPKD--GELCLVRSKSGETLMEDVAILTCKSIVGTGYRGERLIEPSSSWFRPK 344
           +++  C D ++  GE     +KS +T   D ++ +C+S++ TG   + L +   S  RP+
Sbjct: 303 QNDLSCSDSENEGGESFSTTAKSKDTKANDYSMTSCRSVLATGLNEQSLAKRKESIRRPE 362


>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
          Length = 1851

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 234  GETLMED--VAILTCKSIVGTGYRGERLIEPS 323
            G TLM D  VA+L C+  V T   G  LI+PS
Sbjct: 1389 GFTLMHDSNVALLACQICVHTNTSGSTLIQPS 1420


>SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)
          Length = 307

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 210 VHHLSGPSICAQSAPSFTDWKRDASGVRKSR 118
           V  L+  S+C Q APSF + K+ AS VR ++
Sbjct: 183 VRKLAKISLCDQYAPSFKEKKKMASEVRVAK 213


>SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 252 PPSGFPLTST*PGIVHH 202
           PP  FPL S   GIVHH
Sbjct: 5   PPPEFPLASPYSGIVHH 21


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,271,205
Number of Sequences: 59808
Number of extensions: 246059
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)