Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1221
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   3.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   3.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.1  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 307 LSPLYPVPTID 275
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 307 LSPLYPVPTID 275
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 216 LVRSKSGETLMEDVAILTCKSIVGT 290
           L+  +  E L EDV    C+S+V +
Sbjct: 429 LILGELSEKLREDVINYNCRSLVAS 453


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 216 LVRSKSGETLMEDVAILTCKSIVGT 290
           L+  +  E L EDV    C+S+V +
Sbjct: 397 LILGELSEKLREDVINYNCRSLVAS 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,224
Number of Sequences: 438
Number of extensions: 2408
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)