Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1221
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57580.1 68418.m07194 calmodulin-binding protein similar to c...    27   3.7  
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea...    27   3.7  
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes...    26   8.5  

>At5g57580.1 68418.m07194 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 647

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 189 WDPKDGELCLVRSKSGET-LMEDVAILTCKSIVGTGYRGERLIEPSSSWFRPK 344
           W  ++ E  +V+ +SG+  L+     +T K  VGT   GE +   +SSW R +
Sbjct: 160 WTQEEFESHVVKERSGKRPLLTGEVYVTLKEGVGT--LGELVFTDNSSWIRSR 210


>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
           family protein similar to unknown protein (pir||T04661);
           contains Pfam PF00400: WD domain, G-beta repeat (4
           copies, 2 weak)|8683726|gb|AV524198.1|AV524198
          Length = 1124

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = -1

Query: 322 DGSISLSPL-YP--VPTIDLHVRIATSS 248
           +  IS+SPL YP  VPT+D H+ +AT S
Sbjct: 414 ENKISVSPLPYPMVVPTMDPHMTVATFS 441


>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes from
            this gene
          Length = 1035

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
 Frame = +3

Query: 237  ETLMEDVAILTCKS----IVGTGYR 299
            E LMED +I+TC+S    +VGTG +
Sbjct: 967  EQLMEDFSIVTCESSGMGLVGTGQK 991


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,590,033
Number of Sequences: 28952
Number of extensions: 171280
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)