Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1219
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   6.5  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   6.5  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   8.7  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   8.7  

>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
 Frame = -3

Query: 318 LVLPY*WLVVAIVILLSTR-------GTEFRTFGSCTRPSGRWCEATIRG 190
           L++P   L++  V + STR       GTEF  FG+CT  +G  C  T  G
Sbjct: 14  LLIPTALLIIGSVSVPSTRMTLAKVEGTEFGIFGTCT-GNGTDCTETSFG 62


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 218 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 93
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 501 LAKTLYTKGSIGRAFAVPMRTEH 569
           +A+ L   GSI   FAVP++ EH
Sbjct: 401 IAELLEILGSIINGFAVPLKEEH 423


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 19/82 (23%), Positives = 32/82 (39%)
 Frame = -1

Query: 266 REEPSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 87
           R  P   H    L  ++    L S G    +S   +++   GK+   V P  +      D
Sbjct: 277 RRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTSSVTFSD 332

Query: 86  FTSRVSHSKRETRRRSPFGSRR 21
           F + +S S+    ++S  G  R
Sbjct: 333 FAAAISRSRCSRCKKSKKGCDR 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,729
Number of Sequences: 5004
Number of extensions: 48824
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)