Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1219
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   0.94 
07_03_0846 - 21983581-21986055                                         29   2.2  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   2.2  
03_05_0183 - 21681673-21682524                                         29   2.9  
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042...    28   5.0  
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494...    28   5.0  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   8.8  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    27   8.8  
01_01_1235 - 10017728-10017766,10018891-10019352                       27   8.8  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 161 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 27
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 19  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 168
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 248 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 150
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 459 SQAFIATLLFDPSMSALPIIAKQNSPS 379
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>11_06_0061 -
           19702893-19703869,19703960-19704098,19704166-19704287,
           19704362-19704416,19704508-19704624,19704718-19705413,
           19706358-19706393,19707190-19708236
          Length = 1062

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 261 GTEFRTFGSCTRPSGRWCEATIRGIMPERL*GRSQPSRIRQGYAH 127
           GTE           G W EA + G +P R  G   P+R    YAH
Sbjct: 55  GTEVEVRVDADGFHGSWFEAVVVGFVPAR--GPRTPARYAASYAH 97


>02_04_0185 -
           20748206-20748405,20749067-20749232,20749373-20749471,
           20749487-20749561,20749663-20749743,20750121-20750274,
           20750330-20750425,20750518-20750727,20750746-20750957
          Length = 430

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 230 VHEPNVRNSVPLVLSSITIATTSHQ*GKTNL 322
           VH+P VR+ +PL +  + IA T    G+ N+
Sbjct: 220 VHDPEVRDPLPLTIHHLPIAVTFAYFGEGNI 250


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 149 RLGWLRP*RRSGIIP 193
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 142 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 38
           AR C  W PESR  ++ V  ++A    ++R+   A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483


>01_01_1235 - 10017728-10017766,10018891-10019352
          Length = 166

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -1

Query: 227 GRAAGGAKLPSAGLCLNASKAEASLAESGKDM--LTVEPR---ESGGSKQCDFTSRVSHS 63
           G   GGA + +    L+A+     L   G  +  L + PR    S  +     TS  + S
Sbjct: 66  GEDGGGAGVRACSSDLSAAAFADELFREGALLRPLKLPPRLQTPSASAAASAATSPTAAS 125

Query: 62  KRETRRRSPFGSRRS 18
           K  +  RSPF SRRS
Sbjct: 126 KAASSSRSPFASRRS 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,969,248
Number of Sequences: 37544
Number of extensions: 357792
Number of successful extensions: 989
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)