Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1219
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.60 
At5g27670.1 68418.m03317 histone H2A, putative similar to histon...    31   0.79 
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.2  
At2g07738.1 68415.m00989 hypothetical protein                          28   4.2  
At3g58900.1 68416.m06564 F-box family protein contains F-box dom...    28   5.6  
At1g64340.1 68414.m07291 hypothetical protein                          28   5.6  
At4g27120.2 68417.m03898 expressed protein                             27   7.4  
At4g27120.1 68417.m03897 expressed protein                             27   7.4  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   7.4  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    27   9.7  
At1g14740.1 68414.m01762 expressed protein                             27   9.7  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 471 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 364
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g27670.1 68418.m03317 histone H2A, putative similar to histone
           H2A Lycopersicon esculentum SP|P25469, Pisum sativum
           SP|P25470, Petroselinum crispum SP|P19177; contains Pfam
           profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 150

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -1

Query: 272 SVREEPSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRES 108
           ++R +   G L+H +  A+GG  LP+    L   K+ AS +++ K   T  P+++
Sbjct: 97  AIRNDEELGRLLHGVTIASGGV-LPNINPVLLPKKSTASSSQAEKASATKSPKKA 150


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 593 RAKAGLIQMFSTHRDCESTAYRSFSIK 513
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At2g07738.1 68415.m00989 hypothetical protein
          Length = 88

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = -1

Query: 272 SVREEPS----FGHLVHALGRAAGGAKLPSAGLCLNASKAEASL 153
           SVR EPS    F HL   +G++  G+++PS G     S++++ +
Sbjct: 44  SVRLEPSCIQDFDHLAEEIGKSYIGSRVPSKGSSSTKSESDSQV 87


>At3g58900.1 68416.m06564 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 327

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -1

Query: 596 KRAKAGLIQMFSTHRDCESTAYRSFSIKSFSKRCQ---KSYHRDNWL 465
           KR K G++Q F    D     +    IK+FS +C+    S H D W+
Sbjct: 58  KREKEGILQSFMDFVDRVLDLHGDSLIKTFSLKCKTGVDSDHVDRWI 104


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 551 DCESTAYRSFSIKSFSKR 498
           DCEST Y SF + SF+++
Sbjct: 124 DCESTLYDSFELNSFNRQ 141


>At4g27120.2 68417.m03898 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 230 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 54
           + RA GG ++        AS + +++ E+G      +  E+GG++ +          +RE
Sbjct: 47  VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106

Query: 53  TRRRSPFGSRRS 18
            +R++   +R S
Sbjct: 107 AQRQAEEATRES 118


>At4g27120.1 68417.m03897 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 230 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 54
           + RA GG ++        AS + +++ E+G      +  E+GG++ +          +RE
Sbjct: 47  VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106

Query: 53  TRRRSPFGSRRS 18
            +R++   +R S
Sbjct: 107 AQRQAEEATRES 118


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 169 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 29
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 413 ADIEGSKSNVAMNAWLPQ 466
           AD+ GS  NV M AW P+
Sbjct: 122 ADVNGSSHNVLMEAWKPR 139


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 212 GAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK--QCDFTSRVSHSKRETRRRS 39
           G +L  + LC N+ K   SL + GK+++T     S   K  + DF +    +   ++R++
Sbjct: 67  GNELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDKWVERDFFNLREMNPNSSKRKA 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,236,726
Number of Sequences: 28952
Number of extensions: 268278
Number of successful extensions: 671
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)