Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1217
         (633 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.9  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   4.9  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   4.9  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   6.5  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +3

Query: 348 YETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDKIENYVVHPG 476
           +   N+  +   + Q   S+Y+    ++   L  +++ VVHPG
Sbjct: 63  FSPCNNTANYKSEAQNQPSSYKQPSSDMADVLLSLKHAVVHPG 105


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 216 SETRPSKSVSYVHLHRGKE 272
           S T  +  + Y HLHR KE
Sbjct: 149 SSTPTNSCMEYQHLHRYKE 167


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 216 SETRPSKSVSYVHLHRGKE 272
           S T  +  + Y HLHR KE
Sbjct: 149 SSTPTNSCMEYQHLHRYKE 167


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 216 SETRPSKSVSYVHLHRGKE 272
           S T  +  + Y HLHR KE
Sbjct: 149 SSTPTNSCMEYQHLHRYKE 167


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 387 TQKVWSNYEYQKEELL 434
           TQ+VWS Y +    L+
Sbjct: 96  TQRVWSQYNFTNNVLV 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,837
Number of Sequences: 336
Number of extensions: 2529
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)