Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1217
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    31   0.14 
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   5.2  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    25   6.9  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   9.1  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   9.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.1  

>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 183 HVLQSLRFGLNHGLLFRTFKDADNFMYLA 97
           HVL  LR   NH LLFR F D +    +A
Sbjct: 843 HVLMQLRKAANHALLFRKFYDDEKLKQMA 871


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -1

Query: 186 FHVLQSLRFGLNHGLLFRTFKDA------DNFMYLATVSVASCVSFSLDHCNVYSGY 34
           F VLQ L +  N G++ R  K A      D  + LA   VA+ ++   DH  V S Y
Sbjct: 113 FQVLQGLLYLHNQGVIHRDIKGANILTTKDGTIKLADFGVATKINALEDHSVVGSPY 169


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 270 ELIKDANAPAFVREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDK 449
           E+++D   P F  E +R         + T+       +  +K +SNY+Y KE +L     
Sbjct: 301 EVLQDTFLPLFDSEKLR---------FATATSTRFSPQGFEKFYSNYDYYKERILLRPQV 351

Query: 450 IENY 461
           I N+
Sbjct: 352 ISNH 355


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -1

Query: 144 LLFRTFKDADNFMYLATVSVASCVSFSLD-----HCNVY 43
           L+F  ++    F Y+ T++ +SC +  L      HCN Y
Sbjct: 679 LMFLVYRLYSPFTYMTTLTKSSCRALELKGSWNFHCNTY 717


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 414  YQKEELLSDLDKIENYVVHPGLEL 485
            YQ+ EL S++D + +Y+    LEL
Sbjct: 993  YQEYELESNIDNLSSYISDQNLEL 1016


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 201  TTNSCSETRPSKSVSYVHLHRGKELIKDANAPAFVREDVRTLETGWNTAYETSN 362
            TT   +   P+   S  +L  G + + +  A +   +DV+T  T  +T+Y +S+
Sbjct: 951  TTGDLTTIDPTTFTS-TYLSSGFQTVSNTTATSGSDDDVKTASTSSSTSYTSSS 1003


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,872
Number of Sequences: 5004
Number of extensions: 45940
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)