Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1217
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831     29   3.1  
02_03_0267 - 17081551-17082636,17084935-17085252                       29   3.1  
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671...    29   4.1  
04_03_0942 - 20958687-20959082,20959306-20959499,20959582-209599...    29   4.1  
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757...    28   5.4  
01_06_1009 + 33796450-33796824,33796926-33796970,33797069-337971...    28   5.4  
09_02_0409 - 8656136-8656318,8656469-8656609,8658608-8658756,865...    27   9.4  

>12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831
          Length = 418

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 147 HD*ARTSNSAARGTACPRTTNSCSETRPSKSVSYVHLHRGKE-LIKDA 287
           HD A  S      T+CP  T+SC     + S S+ HLH  ++  I+DA
Sbjct: 161 HDPADLSQHEQISTSCPTNTSSCY----TSSSSFSHLHNVRQHAIQDA 204


>02_03_0267 - 17081551-17082636,17084935-17085252
          Length = 467

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = +1

Query: 367 VFISSKTHKKFGLIMNIKRKNYCQIWIKSRITWSTLASNSVSRISDV---TPRN*SIKCR 537
           + +S   +++  L+ N +RK++ +++   RI+ S+  S     I D+   T RN S +  
Sbjct: 155 IALSPLENQEEDLVTNNERKSFSELF--DRISSSSNISEKRQAIKDLRLLTKRNSSFRAV 212

Query: 538 LGESPD 555
           +GE+PD
Sbjct: 213 IGENPD 218


>06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,
            6710704-6710840,6710961-6711301,6711402-6711599
          Length = 921

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 452  RELRGPPWPRTRCHEYRT*LQETKVLSVDLEKAQTEKLPHLQQAYSELRSLTANKP 619
            REL  P WP  +    +T +   +VL    +    E+L  L +   E R L   KP
Sbjct: 833  RELGIPRWPHRKMKSLQTLINNVQVLQEASKANNEEQLRMLVEMLQEERRLLEQKP 888


>04_03_0942 -
           20958687-20959082,20959306-20959499,20959582-20959976,
           20961168-20961532
          Length = 449

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +3

Query: 387 TQKVWSNYEYQKEELLSDLDKIENYVVHPGLELGVTNIGRDSKKLKY*VSTWRKPRQRSC 566
           T+ +WS  +  +   L+ LD++ N ++H   +  V  I    K+++      +   QR+ 
Sbjct: 365 TRFIWSARDASRARRLAKLDEVHNRLIHAAKDSDVDEIRGLLKEVELAGQEKQGVSQRAI 424

Query: 567 LTYSKLTLNF 596
           L ++  T+ F
Sbjct: 425 LAFAAATIIF 434


>07_03_0551 +
           19374405-19374541,19375201-19375435,19375539-19375700,
           19375778-19375819,19375941-19376012,19376291-19376370,
           19376962-19377059,19377691-19377738,19377983-19378083,
           19378331-19378426,19378599-19378689,19379510-19379706,
           19380918-19381004,19381208-19381488,19381653-19381743
          Length = 605

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 321 TLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDL 443
           T E GW T          + K T  +W +Y  Q EEL+ ++
Sbjct: 304 TWEDGWTTV-TADGSWAAQFKHTVHMWQDYRSQAEELIDEI 343


>01_06_1009 +
           33796450-33796824,33796926-33796970,33797069-33797182,
           33797679-33797759,33798038-33798211,33798353-33798438,
           33799157-33799901
          Length = 539

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 222 TRPSKSVSYVHLHRGKELIKDANAPAFVREDVR 320
           TRPS  +S  H H G  L   ANA A+ R   R
Sbjct: 30  TRPSSLLSLPHCHCGLPLPSTANARAYSRSSRR 62


>09_02_0409 -
           8656136-8656318,8656469-8656609,8658608-8658756,
           8658830-8658987,8659326-8659409,8659654-8659787,
           8661255-8661389,8662159-8662551
          Length = 458

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 327 ETGWNTAYETSNDRLHK--LKDTQKVWSNYEYQKEELLSDLDKIENYVVHPGL 479
           + GW   Y  + D LHK  +  ++ +  N+  +KE    D    E  VV PG+
Sbjct: 114 DAGWLLFYSLAGDLLHKQSIYPSKILKLNFRERKENAWEDSGSDELSVVFPGV 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,149,980
Number of Sequences: 37544
Number of extensions: 290024
Number of successful extensions: 682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)