Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1217
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41888| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_47744| Best HMM Match : RrnaAD (HMM E-Value=5.2e-06)                29   4.1  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        28   5.5  
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)                    27   9.6  
SB_7706| Best HMM Match : Spectrin (HMM E-Value=0)                     27   9.6  

>SB_41888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1419

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +3

Query: 303  VREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDKIENYVVHPGLE 482
            V+     L   WNT  +    R+ + +  Q VW  +    ++L S L+++E  +    + 
Sbjct: 897  VKRAASKLRLDWNTVNKDYKTRMVRWEKAQTVWRAFHCDLKDLTSWLNRVERVLADTKMP 956

Query: 483  LGVTNI 500
             G  N+
Sbjct: 957  SGDLNV 962


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 216  SETRPSKSVSYVHLHRGKELIKDANAPAFVREDVRT----LETGWNTAYETSNDRLHKLK 383
            +E R   S+    + +G +L+K    PA  +EDVR     LE  W    E +ND+  +LK
Sbjct: 3437 AEIRTRASIVASVIEKGNKLVK--KLPAHEKEDVREQLVRLEEEWQNLNEQANDKRKELK 3494



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/69 (20%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +3

Query: 270  ELIKDANAPAFVREDV-----RTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELL 434
            E +K  N   F+ E++     ++L   W++   +  DR+  L++    W  +    E+ +
Sbjct: 1915 EGVKSINQGRFINEEIIERKCQSLRAKWDSLGSSIPDRVDSLREEIHSWGKFFSDLEKFI 1974

Query: 435  SDLDKIENY 461
            + +D++E +
Sbjct: 1975 AWVDEMEGF 1983


>SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 213 CSETRPSKSVSYVHLHRGKELIKDANAPAFVREDVRTLETGWNT 344
           C +   S+    ++L R K  +K A   AF+RE  R  ET WNT
Sbjct: 471 CDKIALSEENYIIYLKR-KMSVKFAADSAFIRELYRMKETEWNT 513


>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 375 KLKDTQKVWSNYEYQKEELLSDLDKIENY 461
           K+KDT    +N E QKEE+   + KIENY
Sbjct: 674 KIKDTDSQDANEE-QKEEIAGGILKIENY 701


>SB_47744| Best HMM Match : RrnaAD (HMM E-Value=5.2e-06)
          Length = 401

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 572 SEAASLSGLSPSRHLIL*FLGVTSDIRDTE 483
           S A SL G+SP  H+IL  LG+  D R ++
Sbjct: 308 SLATSLDGISPGSHVILDNLGLPHDTRASD 337


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = +3

Query: 324 LETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDKIENYVVH-----PGLELG 488
           +E  +N  ++ ++D   +L +T      YE++   L+ + + + N V+H       L++ 
Sbjct: 730 MENQFNHTFDEASDLHSQLDNTVADCIKYEHELNMLIQEKEDLRNQVIHAEKRISDLKIA 789

Query: 489 VTNIGRDSKKL 521
           V +  RDS+ L
Sbjct: 790 VQSGERDSEDL 800


>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 340

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 156 ARTSNSAARGTACPRTTNSCSETRPSKS 239
           A TS + A+G+  P +T   S +RP KS
Sbjct: 134 AATSGATAKGSGTPTSTKQPSSSRPFKS 161


>SB_7706| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 686

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
 Frame = +3

Query: 219 ETRPSKSVSYVHLHRGK-ELIKDANAPAFVREDVRTLETGWNTAYETSNDRLHKLKDTQK 395
           E    + +  V+L  G  E  K A +   VRE +  + T W      S+ +   LK+   
Sbjct: 139 EANKERVLETVNLGEGLIEQNKCAGSEPVVRERITRITTQWELLVTKSSQKTQHLKE--- 195

Query: 396 VWSNYEYQKEELLSDLD----KIENYVVHPGLE--LGVTNIGRD 509
             SN + Q    + DLD    +  NYV    +E  L   + GRD
Sbjct: 196 --SNQQQQFNTNIKDLDFWLGECTNYVWRTQVEASLSSDDFGRD 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,947,468
Number of Sequences: 59808
Number of extensions: 360163
Number of successful extensions: 1029
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)