Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1217
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical pr... 31 0.52
Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical pr... 31 0.52
AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical ... 31 0.52
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL132904-19|CAD91707.1| 371|Caenorhabditis elegans Hypothetical... 30 1.2
Z54238-8|CAA90998.3| 459|Caenorhabditis elegans Hypothetical pr... 29 2.1
AC103567-8|AAL35729.1| 305|Caenorhabditis elegans Hypothetical ... 29 2.1
Z70308-1|CAA94351.1| 213|Caenorhabditis elegans Hypothetical pr... 28 4.8
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 28 4.8
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 28 4.8
AL032663-5|CAA21765.1| 896|Caenorhabditis elegans Hypothetical ... 28 6.4
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 28 6.4
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 28 6.4
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 28 6.4
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 28 6.4
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 28 6.4
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 28 6.4
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 28 6.4
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 28 6.4
AC087232-1|AAK09079.2| 574|Caenorhabditis elegans Hypothetical ... 28 6.4
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ... 28 6.4
AL117207-16|CAH60778.1| 402|Caenorhabditis elegans Hypothetical... 27 8.4
>Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical protein
ZC247.1 protein.
Length = 4404
Score = 31.5 bits (68), Expect = 0.52
Identities = 24/94 (25%), Positives = 39/94 (41%)
Frame = +3
Query: 51 YNDQD*NLHTMLHLPSRGT*SYLHP*KCERAGHD*ARTSNSAARGTACPRTTNSCSETRP 230
++D +H ++ PS+ Y K ERA + S++ + N TR
Sbjct: 4233 FDDPALQVHHPIYPPSQSL--YKSTPKTERASYLTNGESSTQTQRNGAANCHNGNGATRS 4290
Query: 231 SKSVSYVHLHRGKELIKDANAPAFVREDVRTLET 332
V +H H E+++D REDV T+ T
Sbjct: 4291 YGKVREIHAHDRTEVLRDTEVRHHRREDVFTVGT 4324
>Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical protein
ZC247.1 protein.
Length = 4404
Score = 31.5 bits (68), Expect = 0.52
Identities = 24/94 (25%), Positives = 39/94 (41%)
Frame = +3
Query: 51 YNDQD*NLHTMLHLPSRGT*SYLHP*KCERAGHD*ARTSNSAARGTACPRTTNSCSETRP 230
++D +H ++ PS+ Y K ERA + S++ + N TR
Sbjct: 4233 FDDPALQVHHPIYPPSQSL--YKSTPKTERASYLTNGESSTQTQRNGAANCHNGNGATRS 4290
Query: 231 SKSVSYVHLHRGKELIKDANAPAFVREDVRTLET 332
V +H H E+++D REDV T+ T
Sbjct: 4291 YGKVREIHAHDRTEVLRDTEVRHHRREDVFTVGT 4324
>AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical
protein ZC247.1 protein.
Length = 4404
Score = 31.5 bits (68), Expect = 0.52
Identities = 24/94 (25%), Positives = 39/94 (41%)
Frame = +3
Query: 51 YNDQD*NLHTMLHLPSRGT*SYLHP*KCERAGHD*ARTSNSAARGTACPRTTNSCSETRP 230
++D +H ++ PS+ Y K ERA + S++ + N TR
Sbjct: 4233 FDDPALQVHHPIYPPSQSL--YKSTPKTERASYLTNGESSTQTQRNGAANCHNGNGATRS 4290
Query: 231 SKSVSYVHLHRGKELIKDANAPAFVREDVRTLET 332
V +H H E+++D REDV T+ T
Sbjct: 4291 YGKVREIHAHDRTEVLRDTEVRHHRREDVFTVGT 4324
>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical
protein F52H3.7a protein.
Length = 1245
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +3
Query: 279 KDANAPAFVREDVRTLETGWNTAYETSNDRLHKLKDT-QKVWSNYEYQKEELLSDLDKIE 455
KDA A ++E V+ N + + D+L ++KDT + +SN + +KEE + + +K +
Sbjct: 39 KDAKDSA-IQEAVQNASAAINDVFTDAVDKLEEVKDTVVEQFSNGDEKKEEAVVE-EKFD 96
Query: 456 NYVVHPGLELGVTNIGRDSKKLK 524
+ VH G++ G T + +++K
Sbjct: 97 S--VHVGVD-GETAVQEAKEEVK 116
>AL132904-19|CAD91707.1| 371|Caenorhabditis elegans Hypothetical
protein Y111B2A.26 protein.
Length = 371
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +3
Query: 297 AFVREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDKIENY 461
A +RED+ G + E S R +L QK+ + E Q EEL S E+Y
Sbjct: 172 AQIREDLDRQSLGKQASEEESERRQLQLDSKQKIIEDLEVQIEELRSPKKPTESY 226
>Z54238-8|CAA90998.3| 459|Caenorhabditis elegans Hypothetical
protein T28C6.7 protein.
Length = 459
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 291 APAFVREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSD 440
A A ++E TLE N YE DRL + DT + N+E ++ LL D
Sbjct: 259 ATARIKELETTLED-INGKYEDERDRLQEEVDTLRSSRNWEIEQNALLRD 307
>AC103567-8|AAL35729.1| 305|Caenorhabditis elegans Hypothetical
protein Y51F10.2 protein.
Length = 305
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 333 GWNTAYETSNDRLHKLKDT---QKVWSNYEYQKEELLSDLDKIENYVVHPGLEL 485
GWN +++ S D+ +L DT +KV+ + +Q + ++K+ +V+ EL
Sbjct: 216 GWNGSHDLSMDKFRELGDTYNQKKVYDAFVHQLRGKTAKIEKLAEHVLRWNDEL 269
>Z70308-1|CAA94351.1| 213|Caenorhabditis elegans Hypothetical
protein F49E11.4 protein.
Length = 213
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 454 RITWSTLASNSVSRISDVTPRN*SIKCRLGES 549
+I+WS +N+ ++ ++ P+N S+ GES
Sbjct: 59 KISWSKKLTNAATKFAETCPKNHSVVMNTGES 90
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 297 AFVREDVRTLETGWNTAYETSNDRLHKLKDT 389
A V+E +R GW+TAYE S+ L DT
Sbjct: 4136 ALVQERLRYTPLGWSTAYEFSDADLRVACDT 4166
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 297 AFVREDVRTLETGWNTAYETSNDRLHKLKDT 389
A V+E +R GW+TAYE S+ L DT
Sbjct: 4136 ALVQERLRYTPLGWSTAYEFSDADLRVACDT 4166
>AL032663-5|CAA21765.1| 896|Caenorhabditis elegans Hypothetical
protein Y75B12B.6 protein.
Length = 896
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 351 ETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDKIENYVVHPGLELGVTNI 500
E N+R ++L + QK E +E S+L I NY+ GV+ +
Sbjct: 498 EMENERFNELTEEQKAAQLSELPEETTCSELSAITNYMQAYETSRGVSTV 547
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 279 KDANAPAF---VREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDK 449
K APAF + V ++TG + Y + + +++ + Y+ QK ++++ +DK
Sbjct: 611 KTETAPAFYSHIDRVVHDMKTGEHPGYTKPEEFVRRIESASNDYIKYDLQKPDVVTIIDK 670
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 279 KDANAPAF---VREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDK 449
K APAF + V ++TG + Y + + +++ + Y+ QK ++++ +DK
Sbjct: 825 KTETAPAFYSHIDRVVHDMKTGEHPGYTKPEEFVRRIESASNDYIKYDLQKPDVVTIIDK 884
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 279 KDANAPAF---VREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDK 449
K APAF + V ++TG + Y + + +++ + Y+ QK ++++ +DK
Sbjct: 961 KTETAPAFYSHIDRVVHDMKTGEHPGYTKPEEFVRRIESASNDYIKYDLQKPDVVTIIDK 1020
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 279 KDANAPAF---VREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDK 449
K APAF + V ++TG + Y + + +++ + Y+ QK ++++ +DK
Sbjct: 1010 KTETAPAFYSHIDRVVHDMKTGEHPGYTKPEEFVRRIESASNDYIKYDLQKPDVVTIIDK 1069
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 279 KDANAPAF---VREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDK 449
K APAF + V ++TG + Y + + +++ + Y+ QK ++++ +DK
Sbjct: 1010 KTETAPAFYSHIDRVVHDMKTGEHPGYTKPEEFVRRIESASNDYIKYDLQKPDVVTIIDK 1069
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 279 KDANAPAF---VREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDK 449
K APAF + V ++TG + Y + + +++ + Y+ QK ++++ +DK
Sbjct: 1002 KTETAPAFYSHIDRVVHDMKTGEHPGYTKPEEFVRRIESASNDYIKYDLQKPDVVTIIDK 1061
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 279 KDANAPAF---VREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDK 449
K APAF + V ++TG + Y + + +++ + Y+ QK ++++ +DK
Sbjct: 1013 KTETAPAFYSHIDRVVHDMKTGEHPGYTKPEEFVRRIESASNDYIKYDLQKPDVVTIIDK 1072
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 279 KDANAPAF---VREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDK 449
K APAF + V ++TG + Y + + +++ + Y+ QK ++++ +DK
Sbjct: 1014 KTETAPAFYSHIDRVVHDMKTGEHPGYTKPEEFVRRIESASNDYIKYDLQKPDVVTIIDK 1073
>AC087232-1|AAK09079.2| 574|Caenorhabditis elegans Hypothetical
protein Y92H12BR.7 protein.
Length = 574
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 259 IEARNSSRMLTLLLSFGKMSGLLRLAGTQPTRHRMIVFISSKTHKK 396
I A + + T+ + F S + L QPT + I F+ + TH K
Sbjct: 135 IPAEKRANVATIPVQFSVFSEKIELRWQQPTARKDIKFLITSTHTK 180
>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 3 protein.
Length = 1603
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 291 APAFVREDVRTLETGW---NTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDKIENY 461
A + EDV + N E NDR+ + K+ + W N E +K + +S D NY
Sbjct: 1452 ADNYETEDVEEFHRSYLLKNEECEVENDRISEKKNYRNKW-NREEKKSDYVSSSDYENNY 1510
>AL117207-16|CAH60778.1| 402|Caenorhabditis elegans Hypothetical
protein Y60A3A.24 protein.
Length = 402
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 339 NTA-YETSNDRLHKLKDTQKVWSNYEYQKEELLSDLDKIEN 458
NTA Y+ N++ KL D +K S + +KE++ +D+D N
Sbjct: 189 NTARYDAKNNQ--KLVDNEKTHSELKEEKEQINADIDTKRN 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,073,023
Number of Sequences: 27780
Number of extensions: 256653
Number of successful extensions: 656
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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