Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1217
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42580.1 68416.m04420 Ulp1 protease family protein contains P...    30   1.5  
At5g27730.1 68418.m03326 expressed protein                             29   3.4  
At4g35730.1 68417.m05071 expressed protein  contains Pfam profil...    29   3.4  
At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containi...    28   4.5  
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016...    28   5.9  

>At3g42580.1 68416.m04420 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 903

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
 Frame = +3

Query: 264 GKELIKDANAPAFVREDVRTLETGWNTAYETSNDRLHKLKDTQKVWSNYEYQKEELLSDL 443
           G+E++K+A +P+FV E V   E   +       DR  +  D +   +N   +KE  + + 
Sbjct: 570 GEEVLKEAQSPSFVVEGV---EDTADQVPIVVPDRTLEAFDDEANLNNVVEEKESPIPEK 626

Query: 444 DKIENY------VVHPGLELGVTNIGRDSKKLK 524
           D +  +      VVH G+     N+  D +K K
Sbjct: 627 DTVPEHPGKKDDVVHMGVSQTEENVAHDVEKEK 659


>At5g27730.1 68418.m03326 expressed protein
          Length = 472

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 399 WSNYEYQKEELLSDLDKIENYVVHPGLELG--VTNIGRDSKKLKY*VSTWRKPRQRSCLT 572
           W    ++ E +LS +  I + ++  G+  G  + ++   S +LK+ +ST         L 
Sbjct: 284 WCRAPFEPEGILSSISAILSTII--GVHFGHIILHLKGHSARLKHWISTGL------VLL 335

Query: 573 YSKLTLNFDHSRPINRNLLS 632
              LTL+F H  P+N+ L S
Sbjct: 336 ALGLTLHFTHLMPLNKQLYS 355


>At4g35730.1 68417.m05071 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 430

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 25/98 (25%), Positives = 37/98 (37%)
 Frame = +3

Query: 189 ACPRTTNSCSETRPSKSVSYVHLHRGKELIKDANAPAFVREDVRTLETGWNTAYETSNDR 368
           A PR+T+S S                 EL K A A A V   + T     N  +  S+D 
Sbjct: 206 AVPRSTSSMSINTHYHDTESA-AEAATELAKQAVAAAQVASLLATRRDSSNKEFSVSSDH 264

Query: 369 LHKLKDTQKVWSNYEYQKEELLSDLDKIENYVVHPGLE 482
               KD+Q +  ++ +      S   +  +Y   PG E
Sbjct: 265 STHQKDSQYMDHHHHHPGSRRQSRDSETSSYYAKPGAE 302


>At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 970

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 177 LQSLRFGLN-HGLLFRTFKDADNFMYLATVSV 85
           L+SLR G   HG + R + + D F+YL+ +S+
Sbjct: 509 LKSLRLGKEVHGFIIRNWLERDLFVYLSVLSL 540


>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
           reticulocyte binding protein; similar to  Myosin heavy
           chain, non-muscle (Zipper protein) (Myosin II)
           (SP:Q99323) {Drosophila melanogaster} similar to EST
           gb|T76116
          Length = 1730

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 482 TRCHEYRT*LQETKVLSVDLEKAQTEKLPHLQQAYSEL 595
           T   E    L+ ++V+   LE++ TEK   L++ Y+EL
Sbjct: 358 TELQEKEIALESSEVMKGQLEQSLTEKTDELEKCYAEL 395


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,424,250
Number of Sequences: 28952
Number of extensions: 242127
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)