Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1216
         (789 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1QKR0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  
UniRef50_Q7RGP8 Cluster: Putative uncharacterized protein PY0429...    33   6.2  

>UniRef50_Q1QKR0 Cluster: Putative uncharacterized protein; n=1;
           Nitrobacter hamburgensis X14|Rep: Putative
           uncharacterized protein - Nitrobacter hamburgensis
           (strain X14 / DSM 10229)
          Length = 57

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 42  PRCQSPCGFGSKPKRPRTNEKPSLENFNYTQRWTNTDLETFPANY 176
           P  +SP G GS PK  R +E P  ENF+   R  N  + T    Y
Sbjct: 9   PEQRSPKGTGSDPKVKRDDEIPERENFDQQGRHGNIKVNTTHQGY 53


>UniRef50_Q7RGP8 Cluster: Putative uncharacterized protein PY04298;
           n=6; Eukaryota|Rep: Putative uncharacterized protein
           PY04298 - Plasmodium yoelii yoelii
          Length = 1848

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = -3

Query: 376 QNIGKLKKKNYTKLF*YW*YQ---MIPHINSISNIFGNCTTINAKDEVSNISRYIDSLN- 209
           +N  K   K+Y KL  +  YQ   + P + +  N+F NC+  NA  E +N+ +  DS+N 
Sbjct: 684 KNRSKSNSKHYNKLKLHE-YQSKIIFPDLKNNKNVFPNCSDENANSESANL-KVNDSVNL 741

Query: 208 --NSRVVLKLNN 179
             N  V LK+N+
Sbjct: 742 KVNDSVNLKVND 753


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,608,067
Number of Sequences: 1657284
Number of extensions: 10179802
Number of successful extensions: 21805
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21794
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)