Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1216
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 30   2.5  
SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         30   2.5  
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 30   2.5  
SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_5816| Best HMM Match : RVT_1 (HMM E-Value=3e-16)                    29   4.3  
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_14513| Best HMM Match : rve (HMM E-Value=0.14)                      28   7.5  

>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 669

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 52  WHRGWRRPGHPQPDLD 5
           W RG R P HP+PDL+
Sbjct: 422 WRRGSRAPNHPRPDLN 437


>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -3

Query: 304  HINSISNIFGNCTTINAKDEVSNISRYIDSLNNS 203
            H++S  +++ + TT++A  +V+NI    DSLN S
Sbjct: 2235 HVSSEVDLYADDTTVSAAADVTNIHLLNDSLNTS 2268


>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 953

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 52  WHRGWRRPGHPQPDLD 5
           W RG R P HP+PDL+
Sbjct: 622 WRRGSRAPNHPRPDLN 637


>SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 52  WHRGWRRPGHPQPDLD 5
           W RG R P HP+PDL+
Sbjct: 486 WWRGSRAPSHPRPDLN 501


>SB_5816| Best HMM Match : RVT_1 (HMM E-Value=3e-16)
          Length = 904

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -3

Query: 304 HINSISNIFGNCTTINAKDEVSNISRYIDSLNNS 203
           H++S  +++ + TT++A  +V+N+    DSLN S
Sbjct: 503 HVSSEVDLYADGTTVSAAADVTNLHLLNDSLNTS 536


>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 52   WHRGWRRPGHPQPDLD 5
            W RG R P HP+PDL+
Sbjct: 974  WWRGSRAPSHPRPDLN 989


>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
          Length = 1101

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 58  GLWHRGWRRPGHPQPDLD 5
           G W R  R P HP+PDL+
Sbjct: 563 GRWRRESRAPNHPRPDLN 580


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,595,567
Number of Sequences: 59808
Number of extensions: 330578
Number of successful extensions: 627
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)