Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1216
         (789 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022692-1|AAY55108.1|  471|Drosophila melanogaster IP12304p pro...    30   3.1  
AE014298-1612|AAF48040.1|  458|Drosophila melanogaster CG15196-P...    30   3.1  

>BT022692-1|AAY55108.1|  471|Drosophila melanogaster IP12304p
           protein.
          Length = 471

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 69  GSKPKRPRTNE-KPSLENFNYTQRWTNTDLETFPANYLLFNFNTTRE 206
           G++P+R   N+ KP+ +  +YT+R T   + T P  YL+      RE
Sbjct: 82  GNEPRRQDPNKPKPNSKQISYTERQTPFRINTHPNAYLVGMHPLVRE 128


>AE014298-1612|AAF48040.1|  458|Drosophila melanogaster CG15196-PA
           protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 69  GSKPKRPRTNE-KPSLENFNYTQRWTNTDLETFPANYLLFNFNTTRE 206
           G++P+R   N+ KP+ +  +YT+R T   + T P  YL+      RE
Sbjct: 69  GNEPRRQDPNKPKPNSKQISYTERQTPFRINTHPNAYLVGMHPLVRE 115


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,586,913
Number of Sequences: 53049
Number of extensions: 474587
Number of successful extensions: 875
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)