Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1215
         (555 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.44 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.44 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.44 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.1  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    22   4.1  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    22   4.1  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 425 TRPSGRWCELPSAGLC 472
           ++ S + CE+PSAGLC
Sbjct: 97  SKKSCQGCEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 425 TRPSGRWCELPSAGLC 472
           ++ S + CE+PSAGLC
Sbjct: 45  SKKSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 425 TRPSGRWCELPSAGLC 472
           ++ S + CE+PSAGLC
Sbjct: 228 SKKSCQGCEMPSAGLC 243


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -2

Query: 554  EPPDSRGSTVSISLPVRLGWLRP 486
            +PPD    T   +  +R+ W+ P
Sbjct: 1102 QPPDKATCTTLTAQTIRVSWVSP 1124


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 275 LGEFCSQDRKSRHR 234
           L E+C+QD K +H+
Sbjct: 65  LVEYCTQDFKKKHK 78


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 275 LGEFCSQDRKSRHR 234
           L E+C+QD K +H+
Sbjct: 65  LVEYCTQDFKKKHK 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,501
Number of Sequences: 336
Number of extensions: 2539
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)