Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1215
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    29   0.61 
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   3.2  
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch...    26   3.2  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    25   5.7  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   5.7  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    25   5.7  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   7.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.5  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    25   9.9  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    25   9.9  

>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -1

Query: 534 LHSEHILAGSARLASALEAFRHNPADGSSHHRPLGRVHEPNVRNCGSSRTEQYYYRNDK 358
           +HS+  +  SA ++SAL      P  G ++ RPL   HE  V   G+ +   YY  +++
Sbjct: 51  VHSKRTVLTSADISSALRTLNVEPLYGFNNSRPL-EFHEAAV---GAGQNSLYYLDDEE 105


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 293 WVNNPTLGEFCSQD 252
           WV+NP+ G+FC +D
Sbjct: 620 WVSNPSPGDFCLRD 633


>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 191 LWQPSVHSDVAF*SFDVGSSYLANKIRQALDCSPIKRERELGLDR-RETG 337
           +++  + +DV     +    Y  NK  +++ C    +ERE+  DR R+TG
Sbjct: 62  IFRQEIANDVTCGRVETALLYFVNKFFRSVGCFGKGKEREVKTDRQRDTG 111


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 498 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 406
           LA   +A R+NP+ G+ H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 108  SPYAY*TSGSSQLLPFCSTRGF 43
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 498 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 406
           LA   +A R+NP+ G+ H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 417 PNVRNCGSSRTEQYYYRNDKPSVG 346
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 172  NFAGTSC*KLFILKDR*AVLSQSL 101
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 459 DGSSHHRPLGRVHEPNVRNCGSSRTEQYYYRN 364
           DG S  +PL  V E +  N G  +T   YY N
Sbjct: 191 DGGSK-QPLSDVDEDSYYNWGGKKTSAQYYVN 221


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 189 ACGSQAFIATLLFDPSMSALPILRTK 266
           ACGS     TLL+DP +    IL+TK
Sbjct: 321 ACGSGK---TLLYDPPIEEFSILQTK 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,945
Number of Sequences: 5004
Number of extensions: 44966
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)