Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1215
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38...    28   4.4  
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590...    28   5.8  
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    27   7.6  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   7.6  

>06_01_0039 -
           386576-387098,387173-387468,387744-388067,388165-388276,
           388355-388482,388914-389048,389122-389250,389620-389787,
           389897-390019,390099-390227,390543-390866,390946-392901
          Length = 1448

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = -1

Query: 540 SGLHSEHILAGSARLASALEAFRHNPADGSSHHRPLGRV-----HEPNVRNCGSSRTEQY 376
           S  H+E+  A  A + S LE+ ++  AD +++     +      H+ + +  GSS + Q 
Sbjct: 393 SNQHTENQTAQQANVES-LESSKYYHADINTYAHSTSQYTSSEDHQASYKGFGSSTSHQS 451

Query: 375 YYRNDKPSVG 346
            Y+  +PSVG
Sbjct: 452 VYKGFEPSVG 461


>01_05_0706 +
           24457148-24458031,24458621-24458822,24458896-24459080,
           24459170-24459503,24459614-24459818,24460022-24460128,
           24460220-24460381
          Length = 692

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = -1

Query: 516 LAGSARLASAL----EAFRHNPADGSSHHRPLG 430
           LAG  RLA AL    EA R +PA+G +H R  G
Sbjct: 259 LAGLGRLADALRDCEEAVRLDPANGRAHSRLAG 291


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 198 CHKPVIPVVTLLAPLAK 148
           C KP+IP  T++APL K
Sbjct: 307 CRKPIIPSGTMVAPLVK 323


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 506 RLGWLRP*RRSGIIP 462
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,644
Number of Sequences: 37544
Number of extensions: 326529
Number of successful extensions: 845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)