Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1215
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like ...    29   2.2  
AF014939-2|ABA00177.1|  537|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    28   5.2  
Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical
           protein C41G7.2 protein.
          Length = 587

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 551 PPDSRGSTVSISLPVRLGWLRP*RRSGIIPRMVVRTTGRSAECMNQMSE 405
           PP ++ ST + SL   +   RP  +  I+P  V     R+A+   +M+E
Sbjct: 119 PPSTQRSTATFSLKPSVARARPVAQKPILPSKVTLLEERNAQLEREMAE 167


>AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 587

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 551 PPDSRGSTVSISLPVRLGWLRP*RRSGIIPRMVVRTTGRSAECMNQMSE 405
           PP ++ ST + SL   +   RP  +  I+P  V     R+A+   +M+E
Sbjct: 119 PPSTQRSTATFSLKPSVARARPVAQKPILPSKVTLLEERNAQLEREMAE 167


>AF014939-2|ABA00177.1|  537|Caenorhabditis elegans Hypothetical
           protein ZC132.3b protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 192 CGSQAFIATLLFDPSMSALPILRTKFAKRWIVHPSK 299
           CG   F   LLF   +S LPI+R K +K  I H  K
Sbjct: 197 CGIYLFCQLLLFVAGLSQLPIMREK-SKAEIPHQEK 231


>AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical
           protein ZC132.3a protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 192 CGSQAFIATLLFDPSMSALPILRTKFAKRWIVHPSK 299
           CG   F   LLF   +S LPI+R K +K  I H  K
Sbjct: 197 CGIYLFCQLLLFVAGLSQLPIMREK-SKAEIPHQEK 231


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 531 HSEHILAGSARLASALEAFRHNPADGSSHHRP 436
           +S+HI      +   ++ FRH P+ G + H P
Sbjct: 279 YSQHIQRQIDEVERKIDEFRHGPSSGPASHHP 310


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 531 HSEHILAGSARLASALEAFRHNPADGSSHHRP 436
           +S+HI      +   ++ FRH P+ G + H P
Sbjct: 279 YSQHIQRQIDEVERKIDEFRHGPSSGPASHHP 310


>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 443 WCELPSAGLCLNASKAEASLAEPARICSLWSPESREA 553
           W + P  G C   S AE+       IC   +P++  A
Sbjct: 77  WHQFPDTGCCYRVSDAESEWHGGTAICKALNPDAEMA 113


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 428 RPSGRWCELPSAGLCLNASKAEAS 499
           RPSG WC     GL L  ++ EAS
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEAS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,830,044
Number of Sequences: 27780
Number of extensions: 253898
Number of successful extensions: 593
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)