Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1215
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.4  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +3

Query: 255 LRTKFAKRWIVHP-SKGNVSWD 317
           +R K A  W++HP S     WD
Sbjct: 71  IRQKAAGHWVIHPCSSFRFYWD 92


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +3

Query: 255 LRTKFAKRWIVHP-SKGNVSWD 317
           +R K A  W++HP S     WD
Sbjct: 71  IRQKAAGHWVIHPCSSFRFYWD 92


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +3

Query: 255 LRTKFAKRWIVHP-SKGNVSWD 317
           +R K A  W++HP S     WD
Sbjct: 71  IRQKAAGHWVIHPCSSFRFYWD 92


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 449 RTTGRSAECMNQMSETAVPLVLSS 378
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -2

Query: 554  EPPDSRGSTVSISLPVRLGWLRP 486
            +PP     T   S  +R+ W+ P
Sbjct: 1083 QPPHDTTCTTLTSQTIRISWMSP 1105



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 554  EPPDSRGSTVSISLPVRLGWLRP*RRSGIIPRMVVRTTGRSAE 426
            E P +  + V  S  + + W  P + +G+I +  V T   +AE
Sbjct: 1181 EAPIAIKALVMSSESILVSWRPPSQPNGVITQYTVYTKADNAE 1223


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 335 LSHDGLIPAHVPF*WVNNPT 276
           +SH   +  HVP  W+  PT
Sbjct: 694 VSHTQRLVVHVPPRWIVEPT 713


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,649
Number of Sequences: 438
Number of extensions: 3368
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)