Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1215
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   2.1  
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ...    28   4.8  
At3g20660.1 68416.m02615 organic cation transporter family prote...    27   8.4  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    27   8.4  

>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 30  LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 143
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
           protein low similarity to glycine-rich RNA-binding
           protein [Euphorbia esula] GI:2645699; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 337

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 260 SQDRKSRHRRIKKQRRYE 207
           SQDR+  HR I+K+R YE
Sbjct: 129 SQDRRKDHRYIEKERAYE 146


>At3g20660.1 68416.m02615 organic cation transporter family protein
           similar to organic cation transporter OCT3 [Rattus
           norvegicus] GI:3273722, organic cation transporter 3
           [Mus musculus] GI:4454795; contains Pfam profile
           PF00083: major facilitator superfamily protein
          Length = 534

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 392 EEPQFRTFGSCTRPSGRWCELPSAGLCLNASKAEASLAEPARIC 523
           +EP++R  GS  R     CEL  +     A K  ++++E   IC
Sbjct: 75  QEPEWRCVGSDCRVGSLNCELDPSSWEWTAGKGSSTVSEWGLIC 118


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 244 ADIEGSKSNVAMNAWLPQ 191
           AD+ GS  NV M AW P+
Sbjct: 122 ADVNGSSHNVLMEAWKPR 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,362,886
Number of Sequences: 28952
Number of extensions: 246893
Number of successful extensions: 603
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)