Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1212
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    28   0.87 
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    28   0.87 
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    27   1.5  
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    27   2.0  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   2.0  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   3.5  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   8.1  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 354 LASALEAFRHNPADGSSHHRPLGRVHEPNVRNCVP 250
           LA   +A R+NP+ G+ H R   R+ +  VR  +P
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLP 90


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 354 LASALEAFRHNPADGSSHHRPLGRVHEPNVRNCVP 250
           LA   +A R+NP+ G+ H R   R+ +  VR  +P
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLP 90


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 463 TSKPIWIAEIDAIGFFLTRASRLRSP 540
           TS+P+++A     G+F T AS L++P
Sbjct: 163 TSRPVYLAVPSDAGYFYTDASPLKTP 188


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 354 LASALEAFRHNPADGSSHHRPLGRVHEPNVRNCVP 250
           LA   +A R+NP+ G+ H R   R+    VR  +P
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLP 90


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 131 LANFVRNDRKSRH-RRIKKQRRYERLAAT 48
           LANF+R DR+S H    +K++ Y ++A++
Sbjct: 696 LANFIRYDRESVHIPEFQKRKSYSQVASS 724


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 48  CGSQAFIATLLFDPSMSALPIIANKIRQAL 137
           CGS   I  +LF  S S L   + KI Q L
Sbjct: 511 CGSSPAIKLILFSKSFSVLQSTSEKIEQLL 540


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 229 SNTAQYERNAVSDIWFMHSAERPVVR--TTIRGIMPERL*GRSQP 357
           S    +E N+++ +WF+HS  R ++     + GI+   + G + P
Sbjct: 766 SKKNNHEINSLTALWFIHSFVRTMIEIICLLIGILASMICGAAYP 810


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,922
Number of Sequences: 5004
Number of extensions: 46643
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)