Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1212
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 31 0.67
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.89
03_05_0183 - 21681673-21682524 31 0.89
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020... 30 1.2
07_03_0846 - 21983581-21986055 29 2.0
10_08_0996 - 22112020-22112859 28 6.2
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 27 8.2
07_03_0626 + 20060013-20060273,20061017-20061274 27 8.2
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 8.2
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 31.1 bits (67), Expect = 0.67
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -1
Query: 375 SLPDSARLAS--ALEAFRHNPADGSSHHRPLGRVHEPNVRNCVPLVLSSITIATTSHQ*G 202
+L D+A +A+ AL FR VH+P VR+ +PL + + IA T G
Sbjct: 187 NLIDAANIAALAALSTFRRPECTVGGEDGQQVTVHDPEVRDPLPLTIHHLPIAVTFAYFG 246
Query: 201 KTNL 190
+ N+
Sbjct: 247 EGNI 250
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 350 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 484
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>03_05_0183 - 21681673-21682524
Length = 283
Score = 30.7 bits (66), Expect = 0.89
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 54 SQAFIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLDRRETG 194
SQAF A LL D + +A+P++ + R A + + + E E RR TG
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPAPE-TETETEEEPPRQRRRTG 274
>08_02_0721 +
20401217-20401360,20401689-20401809,20401969-20402067,
20402790-20402851,20403680-20403797,20404004-20404343,
20404435-20404582,20405043-20405144,20405240-20405359,
20405812-20405895,20405974-20406101,20408314-20408389,
20408556-20408631,20408800-20408876,20408975-20409031,
20409411-20409555,20409634-20409806,20409928-20410054,
20410090-20410192,20410492-20410688,20410946-20411097
Length = 882
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = -2
Query: 239 AVLLSQRQAISRVKLTCL-TTV*SQLTFPFDG*TIQRLANFVRNDRKSRHRR--IKKQ 75
AV+L Q + L L T++ SQL+F +++R+ ++ D +HRR IKKQ
Sbjct: 745 AVVLCQVEKAKEGMLNQLYTSISSQLSFVVSMRSVERIEELIQEDHSVKHRREKIKKQ 802
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -1
Query: 492 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 343
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>10_08_0996 - 22112020-22112859
Length = 279
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 54 SQAFIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLDRRETG 194
+QAF A LL D + +A P++ + R A + + + E E RR TG
Sbjct: 225 AQAFSAVLLADANRTASPVVVVQKRAAPE-TETETEEEPPRQRRRTG 270
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 155 FDG*TIQRLANFVRNDRKSRHRRIKKQ 75
FD T+++ NFVRN+R S + KQ
Sbjct: 872 FDNYTVEQNINFVRNNRSSDINTVTKQ 898
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 362 RLGWLRP*RRSGIIP 318
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 369 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 473
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,405
Number of Sequences: 37544
Number of extensions: 342511
Number of successful extensions: 934
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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