Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1212
(582 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for MG... 72 2e-12
BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein. 30 5.2
AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type ... 30 5.2
U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein. 30 6.8
U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein. 30 6.8
U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein. 30 6.8
L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair prote... 30 6.8
L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair prote... 30 6.8
L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair prote... 30 6.8
L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein. 30 6.8
L47579-1|AAB59571.1| 534|Homo sapiens MSH2 protein. 30 6.8
BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon c... 30 6.8
AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon c... 30 6.8
AL356489-1|CAC88180.1| 130|Homo sapiens T cell receptor beta va... 30 6.8
AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant ... 30 6.8
AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant ... 30 6.8
AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein. 30 6.8
Y09723-1|CAA70889.1| 803|Homo sapiens Miz-1 protein protein. 29 9.1
BC126163-1|AAI26164.1| 803|Homo sapiens zinc finger and BTB dom... 29 9.1
AL034555-3|CAB85445.1| 803|Homo sapiens zinc finger and BTB dom... 29 9.1
AK223618-1|BAD97338.1| 803|Homo sapiens zinc finger and BTB dom... 29 9.1
>BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for
MGC:134704) protein.
Length = 44
Score = 71.7 bits (168), Expect = 2e-12
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = -3
Query: 112 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSGTXC*K 2
MIGRADIEGSKS+VAMNAW PQASYPCGNFS T C K
Sbjct: 1 MIGRADIEGSKSDVAMNAWPPQASYPCGNFSDTSCLK 37
>BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein.
Length = 322
Score = 30.3 bits (65), Expect = 5.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 333 TPLRPKPA*PNPARICSLWSPESRE 407
TP P P P PA +CS SPE R+
Sbjct: 68 TPTPPTPVLPGPASLCSPASPELRQ 92
>AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type
containing 12 protein.
Length = 210
Score = 30.3 bits (65), Expect = 5.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 333 TPLRPKPA*PNPARICSLWSPESRE 407
TP P P P PA +CS SPE R+
Sbjct: 68 TPTPPTPVLPGPASLCSPASPELRQ 92
>U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein.
Length = 887
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein.
Length = 810
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47579-1|AAB59571.1| 534|Homo sapiens MSH2 protein.
Length = 534
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>AL356489-1|CAC88180.1| 130|Homo sapiens T cell receptor beta
variable 25/OR9-2 protein.
Length = 130
Score = 29.9 bits (64), Expect = 6.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 189 SHDGLIPAHVPF*WVNNPTLGEFCSQ 112
S +G+ P H PF WVN+ G+ CS+
Sbjct: 60 SRNGITP-HPPFLWVNSTEKGDLCSE 84
>AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein.
Length = 586
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 63 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 179
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>Y09723-1|CAA70889.1| 803|Homo sapiens Miz-1 protein protein.
Length = 803
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 311 PSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 418
P++G+ A++AEA+L+ES + + VEP G +Q
Sbjct: 201 PTSGMA--AAEAEAALSESSEQEMEVEPARKGEEEQ 234
>BC126163-1|AAI26164.1| 803|Homo sapiens zinc finger and BTB domain
containing 17 protein.
Length = 803
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 311 PSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 418
P++G+ A++AEA+L+ES + + VEP G +Q
Sbjct: 201 PTSGMA--AAEAEAALSESSEQEMEVEPARKGEEEQ 234
>AL034555-3|CAB85445.1| 803|Homo sapiens zinc finger and BTB domain
containing 17 protein.
Length = 803
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 311 PSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 418
P++G+ A++AEA+L+ES + + VEP G +Q
Sbjct: 201 PTSGMA--AAEAEAALSESSEQEMEVEPARKGEEEQ 234
>AK223618-1|BAD97338.1| 803|Homo sapiens zinc finger and BTB domain
containing 17 variant protein.
Length = 803
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 311 PSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 418
P++G+ A++AEA+L+ES + + VEP G +Q
Sbjct: 201 PTSGMA--AAEAEAALSESSEQEMEVEPARKGEEEQ 234
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,713,643
Number of Sequences: 237096
Number of extensions: 1802885
Number of successful extensions: 3977
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3971
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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