Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1210
         (718 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.9  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   3.3  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   5.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   7.6  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   7.6  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   7.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 105 LRKHGFEEN-LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQ 233
           L K     N  +R ++C  E E+    SK   N  G+K   L++
Sbjct: 320 LEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYK 363


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 105 LRKHGFEEN-LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQ 233
           L K     N  +R ++C  E E+    SK   N  G+K   L++
Sbjct: 212 LEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYK 255


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 81  TRCGLVHELRKHGFEENLMRNWVCLVEHESSRDTS 185
           TR  L H    H      +  W+ +V  ES  DTS
Sbjct: 248 TRLFLTHRKPFHPASTQSLSRWIKMVLAESGVDTS 282


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 160 STRHTQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQ 53
           S   T  L R   +  +LS+  R HL +++   PTQ
Sbjct: 48  SKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQ 83


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 123 RSHVSSAHARDRIS*TFWLQNQRRGQPKR 37
           R  ++SA   +      W QN+R  Q KR
Sbjct: 283 RIEIASALQLNETQVKIWFQNRRMKQKKR 311


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 123 RSHVSSAHARDRIS*TFWLQNQRRGQPKR 37
           R  ++SA   +      W QN+R  Q KR
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKR 100


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 123 RSHVSSAHARDRIS*TFWLQNQRRGQPKR 37
           R  ++SA   +      W QN+R  Q KR
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKR 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,225
Number of Sequences: 336
Number of extensions: 2940
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)