Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1210
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.5  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   4.7  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    26   4.7  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    25   8.2  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    25   8.2  

>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 3/23 (13%)
 Frame = +3

Query: 651 QIAY-SNLERN-C-FDKNVGLSF 710
           Q+ Y SNL++N C FDKNVGL F
Sbjct: 412 QVYYASNLDKNYCMFDKNVGLGF 434


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 574 VNILTLYKFRLTFALSRKLENSH*AYRLRIQIWSAIASTKMWG 702
           +N  +LYK  ++F LS  + N    YR   Q W  +   + +G
Sbjct: 244 LNEFSLYKTNISFYLSNFIVNGVLQYRKEFQRWLRLYEFRRFG 286


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 667 FEYAICTLSASFLTFSITQKLT 602
           F    C +S SFLTF++  KLT
Sbjct: 488 FMLGTCIVSVSFLTFTVYAKLT 509


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 85  LVNVLASEPTQRTTK-AKIINFCISIVSF 2
           L N L++   +  TK AK++NFCI I  F
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLF 91


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +1

Query: 604 LTFALSRKLENSH*AYRLRIQIWSAIASTKMW 699
           +T +LS+ ++    A R ++ +W+  ++TK+W
Sbjct: 248 VTRSLSKNIKGDGDAVRAQLWLWNRQSNTKIW 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,625
Number of Sequences: 5004
Number of extensions: 50127
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)