Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1210
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337...    29   4.9  
05_05_0209 - 23282848-23284110                                         29   4.9  

>11_01_0442 -
           3369827-3370168,3370608-3372616,3372953-3373277,
           3373386-3373415
          Length = 901

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +2

Query: 206 RLEGLRIVPDQRPVLVRKGASPGKDCNVKCSDLLTDDITKAAKCAKKIYKRHRFDAWY-- 379
           R EG    P ++P+    GASP    + K    +TD+ T+    AK + ++   +     
Sbjct: 2   REEGGIASPGEKPI--PNGASPNHSQSPKICSRITDNETQGTATAKSLNEKLVLETVSDD 59

Query: 380 GWKNHCQGSLPDI 418
               HCQ   PD+
Sbjct: 60  SSTQHCQSPQPDV 72


>05_05_0209 - 23282848-23284110
          Length = 420

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -1

Query: 430 LAAANIRQRALAVVLPTVPGIEAVTFVNFLSAFRCLSDVVSQEVGALNVAVFAWT 266
           +A A    RA+   L ++  I AV F+ +      L + ++    ALNVA+ AWT
Sbjct: 243 VAVAGHLNRAMLAALVSMATILAVEFLQWWFMLSLLPEAIAV---ALNVAIMAWT 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,543,185
Number of Sequences: 37544
Number of extensions: 339439
Number of successful extensions: 803
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)